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CDS Information : GAU_0029

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Gemmatimonas aurantiaca T-27T (= NBRC 100505T) chromosome

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close this sectionLocation

Organism Gemmatimonas aurantiaca T-27T (= NBRC 100505T)
Replicon chromosome
Start / Stop / Direction 39,212 / 38,469 / -
Location complement(38469..39212)
Type CDS
Length 744 bp (247 aa)

close this sectionAnnotation

Product hypothetical protein
Gene name
Functional category Unclassified
- hypothetical protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR007497

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=2e-29B3EG92_CHLLIPutative uncharacterized protein OS=Chlorobium limicola DSM 245 GN=Clim_2072 PE=3 SV=1not found in DB
2E=2e-27A1BIC3_CHLPDPutative uncharacterized protein precursorAlignment
3E=9e-27A1B3D1_PARDPPutative uncharacterized protein precursorAlignment
4E=3e-26A9WIJ5_CHLAAPutative uncharacterized protein precursorAlignment
5E=3e-26Q21CU4_RHOPBPutative uncharacterized protein precursorAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR007497 Protein of unknown function DUF541 (Family)
 [35-245]  2.8e-42 PF04402
PF04402   DUF541
SignalP
 [1-28]  1 Signal
Bacteria, Gram-negative   
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 247 amino acids
molecular mass 26,704.63 Da
pI 10.37
aa composition
AlaValLeuIlePheTrpProMetGlySer
15.8
(39aa)
10.9
(27aa)
4.9
(12aa)
4.5
(11aa)
1.6
(4aa)
0.8
(2aa)
5.3
(13aa)
4
(10aa)
5.3
(13aa)
6.1
(15aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.1
(15aa)
0
(0aa)
2.8
(7aa)
7.3
(18aa)
1.6
(4aa)
4.9
(12aa)
0
(0aa)
8.1
(20aa)
3.2
(8aa)
6.9
(17aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.