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CDS Information : GAU_1292

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close this sectionGenomic map

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Gemmatimonas aurantiaca T-27T (= NBRC 100505T) chromosome

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Organism Gemmatimonas aurantiaca T-27T (= NBRC 100505T)
Replicon chromosome
Start / Stop / Direction 1,542,018 / 1,543,202 / +
Location 1542018..1543202
Type CDS
Length 1,185 bp (394 aa)

close this sectionAnnotation

Product acyl-CoA dehydrogenase
Gene name
Functional category Metabolism
- Lipid Metabolism
EC number 1.3.99.-
Note
KEGG pathway map:00071 KO:K00249
map:00280 KO:K00249
map:00640 KO:K00249
map:00410 KO:K00249
Sequence feature
References Family/Domain:IPR006089
Uniprot:Q06319 Pubmed:8399220

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-108Q3ACF1_CARHZButyryl-CoA dehydrogenaseAlignment
2E=1e-108Q1IZ58_DEIGDAcyl-CoA dehydrogenase-like proteinAlignment
3E=1e-106Q3ACH7_CARHZButyryl-CoA dehydrogenaseAlignment
4E=1e-106Q9K6D1_BACHDAcyl-CoA dehydrogenaseAlignment
5E=1e-105A9CFA0_AGRT5Acyl-CoA dehydrogenaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR006089 Acyl-CoA dehydrogenase, conserved site (Conserved_site)
 [340-359]  PS00073
PS00073   ACYL_COA_DH_2
 [125-137]  PS00072
PS00072   ACYL_COA_DH_1
IPR006089 Acyl-CoA dehydrogenase (Domain)
 [340-359]  PS00073
PS00073   ACYL_COA_DH_2
 [125-137]  PS00072
PS00072   ACYL_COA_DH_1
IPR006089 Acyl-CoA dehydrogenase (Family)
 [340-359]  PS00073
PS00073   ACYL_COA_DH_2
 [125-137]  PS00072
PS00072   ACYL_COA_DH_1
IPR006090 Acyl-CoA dehydrogenase, type 1 (Domain)
 [233-382]  6.1e-73 PF00441
PF00441   Acyl-CoA_dh_1
IPR006091 Acyl-CoA dehydrogenase/oxidase, central region (Domain)
 [123-174]  5.8e-26 PF02770
PF02770   Acyl-CoA_dh_M
 [122-230]  5.8e-33 G3DSA:2.40.110.10
G3DSA:2.40.110.10   no description
IPR006092 Acyl-CoA dehydrogenase, N-terminal (Domain)
 [7-119]  9.1e-41 PF02771
PF02771   Acyl-CoA_dh_N
IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal (Domain)
 [233-382]  1.5e-53 SSF47203
SSF47203   Acyl-CoA dehydrogenase C-terminal domain-like
IPR009100 Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (Domain)
 [4-232]  3.7e-86 SSF56645
SSF56645   Acyl-CoA dehydrogenase NM domain-like
IPR013764 Acyl-CoA dehydrogenase, type1/2, C-terminal (Domain)
 [234-386]  2.7e-54 G3DSA:1.20.140.10
G3DSA:1.20.140.10   no description
IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal (Domain)
 [5-121]  3.3e-37 G3DSA:1.10.540.10
G3DSA:1.10.540.10   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 394 amino acids
molecular mass 42,923.91 Da
pI 5.54
aa composition
AlaValLeuIlePheTrpProMetGlySer
13.2
(52aa)
4.8
(19aa)
10.9
(43aa)
5.1
(20aa)
3.3
(13aa)
0.8
(3aa)
3.3
(13aa)
3
(12aa)
8.9
(35aa)
5.6
(22aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.1
(24aa)
0.8
(3aa)
2.3
(9aa)
4.6
(18aa)
2.8
(11aa)
3.3
(13aa)
1.3
(5aa)
7.6
(30aa)
4.6
(18aa)
7.9
(31aa)

open this sectionSequence