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CDS Information : GAU_1536

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close this sectionGenomic map

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Gemmatimonas aurantiaca T-27T (= NBRC 100505T) chromosome

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Organism Gemmatimonas aurantiaca T-27T (= NBRC 100505T)
Replicon chromosome
Start / Stop / Direction 1,844,220 / 1,845,851 / +
Location 1844220..1845851
Type CDS
Length 1,632 bp (543 aa)

close this sectionAnnotation

Product 60 kDa chaperonin
Synonym: protein Cpn60
Synonym: GroEL protein
Gene name groEL
Functional category Environmental Information and Cellular Processing
- Cellular Processes
EC number
Note The N-terminus of this ORF was identified by Edman sequencing.
KEGG pathway KO:K04077
Sequence feature
References HAMAP:MF_00600 Family/Domain:IPR012723
Family/Domain:IPR001844

close this sectionProteome

Proteome results
2D-PAGE (Protein Sequencer)
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close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0B0PME2_9DELT60 kDa chaperoninAlignment
2E=0CH602_ANADE60 kDa chaperonin 2
Protein Cpn60 2
groEL protein 2
Alignment
3E=0A8VBK9_9DELT60 kDa chaperoninAlignment
4E=0CH602_SYNAS60 kDa chaperonin 2
Protein Cpn60 2
groEL protein 2
Alignment
5E=0B3EGF4_CHLLIChaperonin GroEL OS=Chlorobium limicola DSM 245 GN=Clim_0498 PE=4 SV=1not found in DB
HAMAP
Database:HAMAP:20080521
 [2-542]  41.926 MF_00600
MF_00600   CH60
InterPro
Database:interpro:18.0
IPR001844 Chaperonin Cpn60 (Family)
 [405-416]  PS00296
PS00296   CHAPERONINS_CPN60
IPR002423 Chaperonin Cpn60/TCP-1 (Family)
 [10-523]  1.8e-78 SSF48592
SSF48592   GroEL equatorial domain-like
 [23-526]  2.5e-201 PF00118
PF00118   Cpn60_TCP1
 [2-542]  PTHR11353
PTHR11353   CHAPERONIN
IPR008950 GroEL-like chaperone, ATPase (Domain)
 [10-523]  1.8e-78 SSF48592
SSF48592   GroEL equatorial domain-like
IPR012723 chaperonin GroEL (Family)
 [3-528]  TIGR02348
TIGR02348   GroEL: chaperonin GroL
IPR018370 Chaperonin Cpn60, conserved site (Conserved_site)
 [405-416]  PS00296
PS00296   CHAPERONINS_CPN60
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 543 amino acids
molecular mass 57,743.51 Da
pI 5.13
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.5
(68aa)
9.8
(53aa)
8.5
(46aa)
7.2
(39aa)
1.5
(8aa)
0
(0aa)
3.1
(17aa)
2.4
(13aa)
9.4
(51aa)
2.4
(13aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.8
(37aa)
0.2
(1aa)
2.9
(16aa)
2.8
(15aa)
1.1
(6aa)
8.7
(47aa)
0.7
(4aa)
4.8
(26aa)
6.3
(34aa)
9
(49aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.