CDS Information : KRH_00030

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	3,433 / 4,857 / +
Location	3433..4857
Type	CDS
Length	1,425 bp (474 aa)

Product	DNA replication and repair protein RecF
Gene name	recF
Functional category	Genetic Information Processing - Replication and Repair
EC number
Note
KEGG pathway	KO:K03629
Sequence feature
References	HAMAP:MF_00365

UniProt	B2GIG0
INSD	BAG28350.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733D88

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=1e-108 RECF_STRCO DNA replication and repair protein recF Alignment 2 E=1e-108 A0JQT5_ARTS2 DNA replication and repair protein RecF Alignment 3 E=1e-108 Q308R4_STRAA DNA replication and repair protein recF Alignment 4 E=1e-106 RECF_STRAW DNA replication and repair protein recF Alignment 5 E=1e-106 A1R0S5_ARTAT Putative DNA replication and repair protein RecF Alignment
HAMAP Database:HAMAP:20070519	MF_00365   RECF
InterPro Database:interpro:16.0	IPR001238 RecF protein (Family) PS00618   RECF_2 PS00617   RECF_1 TIGR00611   recf: DNA replication and repair protein Re IPR003395 SMC protein, N-terminal (Domain) PF02463   SMC_N IPR018078 DNA-binding, RecF, conserved site (Conserved_site) PS00617   RECF_1 PS00618   RECF_2
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	474 amino acids
molecular mass	51,773.01 Da
pI	6.37
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 13.3 (63aa) 7.6 (36aa) 11.6 (55aa) 1.5 (7aa) 1.7 (8aa) 0.8 (4aa) 6.8 (32aa) 1.3 (6aa) 6.3 (30aa) 6.3 (30aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.7 (27aa) 0 (0aa) 1.9 (9aa) 4.6 (22aa) 1.3 (6aa) 1.3 (6aa) 3.6 (17aa) 10.5 (50aa) 6.5 (31aa) 7.4 (35aa)

>KRH_00030 DNA replication and repair protein RecF
GTGTTCGTAGACCACCTCTCGCTGCTGGACTTCCGGACCTACGCGGGCCTGGACCTCGCG
CTCACCCCGGGGCTCACGGTCTTCGTGGGGCCCAACGGGGTGGGCAAGACCAACATCGTG
GAGGCCGTCGACTGGGCCGCGACCCTCGGCTCCCACCGGGTCTCGGGCAACACCCCGCTG
ATCGCCACCGGTGCGGAACGGGCCATCGTGCGGCTGCGGGTGAACCGCGGTGGCCAGCGC
ACGGTCCTGGAGCACGAGCTCAACGCCACCCGGGCCAACAGGGTGCGGCTCAACCGGGCG
GCGCCCGTCCGCGCGCGCGAGTCCCTGGGGATCCTGCACACCGTGCTGTTCTCGCCGGAG
GACCTCACCCTGGTCAAGGGGGACCCCTCCCACCGGCGGCGGTTCCTGGACGACCTCGCC
ACCGCGATGCGCCCGGTGCTCTCGGCCGCGCGCTCGGACTACGAGCGTGCCCTCAGGCAG
CGCAACGCCCTGCTGAAGTCCACGCGGCGCTCACACGGTCTCTCCGACTCCGACCGCGCC
ACCCTGGCCGTGTGGAACGACCAGCTGGCCCGCGCCGGTGCCGCCGTGATGGCCGCGCGG
CTCCAGCTGCTCAAGGCGCTCGAACCGGAGGTGGACCGCGCGTACCAGCAGCTCACCGAG
GGTCCCAAGCACGTCACGCTCGAGTACGAGAGCTCGTCGGTTGCCCCCGGTGCGGAGCAG
CAGGCCCTGCAGCACTTCTCCGTGGCGGACCTGCACGAGCTCATGATGCAGGCGTTCGAG
CGCATGGAGCGCCAGGAGCGCGAACGGGGCATCACCCTGGTGGGACCGCACCGGGACGAC
CTCGTGATCCACCTGGGCGACACGCCTGCCAAGGGCTACGCCTCCCACGGGGAGACCTGG
TCCACCGCTCTCGCCCTGCGCCTGGGCTCGTGGTACGTGCACCTCGCCGACGACCCCTCG
CCCGGCGCGGCCCCCGTGCTCATCCTGGACGACGTCTTCGCAGAGCTGGACGCCCGGCGC
CGGCGCCGGCTCGCGGAGCTCGTGCGGCAGGCGGAGCAGGTGCTGGTCACCGCCGCCGTG
GACGAGGACCTCCCGGCGGCGCTGCTGGAGCACTCCCACACGGTGGTGGATGTGGAACCG
GGGGCGGTGCGCGTGCGGGGCGCCGCGGCGTCGTCGTCCCCGGCGGCCGCCCCGAGCGAG
GTGACGACGCCGCACGCGGACCTGCCGCGCGAACCACCCGCCCCGGCGGGGTCACCGGAG
CACGCGTCGGAGGCACCGGGCAGCACGGCACCGGACGGGCTCCGCCTGGAGACGCAGCGC
TCCCAAGAGCAGCAGCCCGAACGGCAGCGGCCCGGCCAGCAGGACGCACGGACGCAGCAG
TCCGACCCGCGCCGCCCCGAGGAACGAGATCCCGGCGATGAGTGA


>KRH_00030 DNA replication and repair protein RecF
MFVDHLSLLDFRTYAGLDLALTPGLTVFVGPNGVGKTNIVEAVDWAATLGSHRVSGNTPL
IATGAERAIVRLRVNRGGQRTVLEHELNATRANRVRLNRAAPVRARESLGILHTVLFSPE
DLTLVKGDPSHRRRFLDDLATAMRPVLSAARSDYERALRQRNALLKSTRRSHGLSDSDRA
TLAVWNDQLARAGAAVMAARLQLLKALEPEVDRAYQQLTEGPKHVTLEYESSSVAPGAEQ
QALQHFSVADLHELMMQAFERMERQERERGITLVGPHRDDLVIHLGDTPAKGYASHGETW
STALALRLGSWYVHLADDPSPGAAPVLILDDVFAELDARRRRRLAELVRQAEQVLVTAAV
DEDLPAALLEHSHTVVDVEPGAVRVRGAAASSSPAAAPSEVTTPHADLPREPPAPAGSPE
HASEAPGSTAPDGLRLETQRSQEQQPERQRPGQQDARTQQSDPRRPEERDPGDE

NBRC No.	clone name	start	stop	length(bp)
G09-002-001	MDFO1S8501K15	2,744	37,820	35,077
G09-002-075	MDFO1S8502P22	2,669,973	12,875	40,443

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.