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CDS Information : KRH_00050

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close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 5,696 / 7,756 / +
Location 5696..7756
Type CDS
Length 2,061 bp (686 aa)

close this sectionAnnotation

Product DNA gyrase subunit B
Gene name gyrB
Functional category Genetic Information Processing
- Replication and Repair
EC number 5.99.1.3
Note Two KRH_00060 products and two KRH_00050 products may form a tetramer.
KEGG pathway KO:K02470
Sequence feature
References Family/Domain:IPR011557
Uniprot:A0QNE0 Pubmed:8878580

close this sectionRelated links to external database

UniProtB2GIG2
INSDBAG28352.1 (DDBJ GenBank EMBL)
UniParcUPI0001733D8A

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=0A0JQT7_ARTS2DNA gyrase subunit BAlignment
2E=0A1R0S7_ARTATDNA gyrase, B subunitAlignment
3E=0A4AEW6_9ACTNDNA topoisomerase IV subunit BAlignment
4E=0Q6AHN1_LEIXXDNA gyrase subunit BAlignment
5E=0A5CLT8_CLAM3DNA gyrase subunit BAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR000565 DNA topoisomerase, type IIA, subunit B (Family)
 [11-21]  2.1e-66 PR01159 [186-201]  2.1e-66 PR01159 [201-214]  2.1e-66 PR01159 [288-306]  2.1e-66 PR01159 [358-374]  2.1e-66 PR01159 [406-420]  2.1e-66 PR01159 [420-440]  2.1e-66 PR01159 [516-525]  2.1e-66 PR01159 [639-651]  2.1e-66 PR01159 [655-671]  2.1e-66 PR01159
PR01159   DNAGYRASEB
IPR001241 DNA topoisomerase, type IIA, subunit B or N-terminal (Domain)
 [30-218]  PTHR10169 [255-685]  PTHR10169
PTHR10169   DNA TOPOISOMERASE/GYRASE
 [40-55]  7.7e-67 PR00418 [75-88]  7.7e-67 PR00418 [118-132]  7.7e-67 PR00418 [314-327]  7.7e-67 PR00418 [466-480]  7.7e-67 PR00418 [532-548]  7.7e-67 PR00418 [550-567]  7.7e-67 PR00418 [570-582]  7.7e-67 PR00418 [618-634]  7.7e-67 PR00418
PR00418   TPI2FAMILY
 [40-679]  SM00433
SM00433   no description
 [468-476]  PS00177
PS00177   TOPOISOMERASE_II
IPR001241 DNA topoisomerase, type IIA (Family)
 [40-55]  7.7e-67 PR00418 [75-88]  7.7e-67 PR00418 [118-132]  7.7e-67 PR00418 [314-327]  7.7e-67 PR00418 [466-480]  7.7e-67 PR00418 [532-548]  7.7e-67 PR00418 [550-567]  7.7e-67 PR00418 [570-582]  7.7e-67 PR00418 [618-634]  7.7e-67 PR00418
PR00418   TPI2FAMILY
 [40-679]  SM00433
SM00433   no description
IPR002288 DNA topoisomerase, type IIA, subunit B, C-terminal (Domain)
 [609-675]  1.9e-41 PF00986
PF00986   DNA_gyraseB_C
IPR003594 ATP-binding region, ATPase-like (Domain)
 [36-181]  9e-25 SM00387
SM00387   no description
 [10-224]  1.4e-68 SSF55874
SSF55874   ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
 [8-225]  1.8e-80 G3DSA:3.30.565.10
G3DSA:3.30.565.10   no description
 [36-180]  5.5e-30 PF02518
PF02518   HATPase_c
IPR006171 TOPRIM (Domain)
 [464-575]  1e-07 PF01751
PF01751   Toprim
IPR011557 DNA gyrase, subunit B (Family)
 [11-686]  TIGR01059
TIGR01059   gyrB: DNA gyrase, B subunit
IPR011558 DNA topoisomerase, type IIA, subunit B, conserved region (Domain)
 [471-582]  2e-37 PD149633
PD149633   Q6AHN1_BBBBB_Q6AHN1;
IPR013506 DNA topoisomerase, type IIA, subunit B, region 2 (Domain)
 [263-437]  3.2e-83 PF00204
PF00204   DNA_gyraseB
IPR013759 DNA topoisomerase, type IIA, subunit B or N-terminal, alpha-beta (Domain)
 [430-658]  5.4e-73 G3DSA:3.40.50.670
G3DSA:3.40.50.670   no description
IPR013760 DNA topoisomerase, type IIA, central (Domain)
 [440-681]  8.5e-89 SSF56719
SSF56719   Type II DNA topoisomerase
IPR014721 Ribosomal protein S5 domain 2-type fold (Domain)
 [289-430]  5e-10 G3DSA:3.30.230.10
G3DSA:3.30.230.10   no description
IPR018522 DNA topoisomerase, type IIA, conserved site (Conserved_site)
 [468-476]  PS00177
PS00177   TOPOISOMERASE_II
IPR020568 Ribosomal protein S5 domain 2-type fold (Domain)
 [263-438]  1e-55 SSF54211
SSF54211   Ribosomal protein S5 domain 2-like
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 686 amino acids
molecular mass 75,507.53 Da
pI 4.76
aa composition
AlaValLeuIlePheTrpProMetGlySer
9.2
(63aa)		6.3
(43aa)		8.7
(60aa)		5
(34aa)		3.4
(23aa)		0.7
(5aa)		3.5
(24aa)		2.5
(17aa)		9.6
(66aa)		4.8
(33aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.7
(46aa)		0.4
(3aa)		3.1
(21aa)		3.8
(26aa)		2.9
(20aa)		4.4
(30aa)		2.6
(18aa)		6.6
(45aa)		8
(55aa)		7.9
(54aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-002-001 MDFO1S8501K15 2,744 37,820 35,077
G09-002-075 MDFO1S8502P22 2,669,973 12,875 40,443

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.