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CDS Information : KRH_00060

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close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 7,897 / 10,539 / +
Location 7897..10539
Type CDS
Length 2,643 bp (880 aa)

close this sectionAnnotation

Product DNA gyrase subunit A
Gene name gyrA
Functional category Genetic Information Processing
- Replication and Repair
EC number 5.99.1.3
Note Two KRH_00060 products and two KRH_00050 products may form a tetramer.
KEGG pathway KO:K02469
Sequence feature
References Family/Domain:IPR005743
Uniprot:Q07702 Pubmed:7981652

close this sectionRelated links to external database

UniProtB2GIG3
INSDBAG28353.1 (DDBJ GenBank EMBL)
UniParcUPI0001733D8B

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=0A0JQT8_ARTS2DNA gyrase subunit AAlignment
2E=0A1R0S8_ARTATDNA gyrase, A subunitAlignment
3E=0Q6AHN0_LEIXXDNA gyrase subunit AAlignment
4E=0A4AEW7_9ACTNDNA gyrase subunit AAlignment
5E=0A5CLT9_CLAM3DNA gyrase subunit AAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR001241 DNA topoisomerase, type IIA, subunit B or N-terminal (Domain)
 [36-194]  7.7e-11 PTHR10169
PTHR10169   DNA TOPOISOMERASE/GYRASE
IPR002205 DNA topoisomerase, type IIA, subunit A or C-terminal (Domain)
 [15-472]  3.4e-262 SM00434
SM00434   no description
 [36-487]  3.6e-287 PF00521
PF00521   DNA_topoisoIV
 [51-126]  4e-34 PD000742
PD000742   Q6AHN0_BBBBB_Q6AHN0;
IPR005743 DNA gyrase, subunit A (Family)
 [12-817]  TIGR01063
TIGR01063   gyrA: DNA gyrase, A subunit
IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel (Repeat)
 [511-560]  1.1e-15 PF03989 [561-613]  3.3e-10 PF03989 [617-664]  2.8e-12 PF03989 [665-716]  5.2e-12 PF03989 [717-767]  2.5e-11 PF03989 [768-817]  6.3e-06 PF03989
PF03989   DNA_gyraseA_C
IPR013757 DNA topoisomerase, type IIA, subunit A, alpha-helical (Domain)
 [377-466]  1.8e-25 G3DSA:1.10.268.10
G3DSA:1.10.268.10   no description
IPR013758 DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta (Domain)
 [34-303]  1.1e-103 G3DSA:3.90.199.10
G3DSA:3.90.199.10   no description
IPR013760 DNA topoisomerase, type IIA, central (Domain)
 [6-498]  6.5e-173 SSF56719
SSF56719   Type II DNA topoisomerase
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 880 amino acids
molecular mass 97,431.87 Da
pI 4.87
aa composition
AlaValLeuIlePheTrpProMetGlySer
9.1
(80aa)		10.5
(92aa)		8.5
(75aa)		4.9
(43aa)		2
(18aa)		0.5
(4aa)		3.5
(31aa)		2.7
(24aa)		8.4
(74aa)		3.9
(34aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.8
(42aa)		0.2
(2aa)		3.8
(33aa)		4.7
(41aa)		3.1
(27aa)		3.4
(30aa)		2.3
(20aa)		8.2
(72aa)		8.2
(72aa)		7.5
(66aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-002-001 MDFO1S8501K15 2,744 37,820 35,077
G09-002-075 MDFO1S8502P22 2,669,973 12,875 40,443

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.