small fontnormal fontlarge fontmail to

CDS Information : KRH_00180

close allopen/close all

close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

 Legend Jump
Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 21,173 / 22,582 / +
Location 21173..22582
Type CDS
Length 1,410 bp (469 aa)

close this sectionAnnotation

Product putative MFS transporter
Gene name
Functional category Environmental Information and Cellular Processing
- Membrane Transport
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR011701
Uniprot:O31137 Pubmed:9687386

close this sectionRelated links to external database

UniProtB2GIX4
INSDBAG28365.1 (DDBJ GenBank EMBL)
UniParcUPI0001733D97

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=1e-110A0JRP1_ARTS2Major facilitator superfamily MFS_1 precursorAlignment
2E=1e-108A1R1R6_ARTATPutative transmembrane efflux protein
MFS		Alignment
3E=7e-99O31137_MYCSMTetracycline-resistance determinant tetVAlignment
4E=7e-99A0R2P5_MYCS2Tetracycline-resistance determinant TetVAlignment
5E=1e-96A1TDV5_MYCVPH+ Antiporter proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR011701 Major facilitator superfamily MFS-1 (Domain)
 [18-431]  1.7e-21 PF07690
PF07690   MFS_1
IPR011701 Major facilitator superfamily MFS_1 (Family)
 [18-431]  1.7e-21 PF07690
PF07690   MFS_1
IPR016196 Major facilitator superfamily, general substrate transporter (Domain)
 [1-466]  1.5e-34 SSF103473
SSF103473   MFS general substrate transporter
SignalP 
 [1-42]  0.98 Signal
Bacteria, Gram-positive   
TMHMM 
 [15-37]  Transmembrane (o-i) [50-72]  Transmembrane (i-o) [78-100]  Transmembrane (o-i) [105-127]  Transmembrane (i-o) [169-191]  Transmembrane (o-i) [281-303]  Transmembrane (i-o) [318-340]  Transmembrane (o-i) [347-366]  Transmembrane (i-o) [370-392]  Transmembrane (o-i) [404-426]  Transmembrane (i-o) [436-455]  Transmembrane (o-i)
Transmembrane 11   
SOSUI 
 [17-39]  Transmembrane [50-72]  Transmembrane [77-99]  Transmembrane [104-126]  Transmembrane [171-192]  Transmembrane [286-308]  Transmembrane [319-341]  Transmembrane [355-377]  Transmembrane [409-431]  Transmembrane [437-458]  Transmembrane
Transmembrane 10   

close this sectionCalculated information (Amino acid sequence)

size of protein 469 amino acids
molecular mass 48,510.04 Da
pI 7.33
aa composition
AlaValLeuIlePheTrpProMetGlySer
17.1
(80aa)		10.4
(49aa)		13.2
(62aa)		2.8
(13aa)		4.5
(21aa)		2.6
(12aa)		5.3
(25aa)		4.5
(21aa)		11.9
(56aa)		4.9
(23aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.5
(21aa)		0.9
(4aa)		0.4
(2aa)		1.5
(7aa)		1.5
(7aa)		0.6
(3aa)		3.8
(18aa)		4.3
(20aa)		3.8
(18aa)		1.5
(7aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-002-001 MDFO1S8501K15 2,744 37,820 35,077

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.