CDS Information : KRH_00210

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	27,578 / 26,313 / -
Location	complement(26313..27578)
Type	CDS
Length	1,266 bp (421 aa)

Product	putative NagC family transcriptional regulator
Gene name
Functional category	Genetic Information Processing - Transcription
EC number
Note	Belongs to the NagC transcriptional regulator family, which includes the N-acetylglucosamine repressor NagC of Escherichia coli (P0AF20) and the xylose repressor XylR of Bacillus subtilis (P16557). Similar to the xylose repressor XylR of Bacillus subtilis (P16557).
KEGG pathway
Sequence feature
References	Family/Domain:nagC_CTD Family/Domain:nagC_DBD

UniProt	B2GIX7
INSD	BAG28368.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733D9A

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=7e-97 Q0SE65_RHOSR Possible xylose repressor Alignment 2 E=8e-94 Q3W1X0_9ACTO ROK Alignment 3 E=1e-89 O50502_STRCO Probable transcriptional repressor protein Alignment 4 E=1e-88 Q82KW4_STRAW Putative ROK-family transcriptional regulator Alignment 5 E=2e-88 Q8RJU7_STROI Cytoplasmic protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000600 ROK (Family) PF00480   ROK PS01125   ROK
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	421 amino acids
molecular mass	43,125.94 Da
pI	6.51
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 14.7 (62aa) 10.9 (46aa) 12.4 (52aa) 2.1 (9aa) 0.5 (2aa) 0.2 (1aa) 5.9 (25aa) 0.7 (3aa) 11.6 (49aa) 7.1 (30aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4 (17aa) 1.7 (7aa) 1.7 (7aa) 1.7 (7aa) 1 (4aa) 0.5 (2aa) 2.9 (12aa) 9.3 (39aa) 5.5 (23aa) 5.7 (24aa)

>KRH_00210 putative NagC family transcriptional regulator
ATGGAGTACTCGCCCCCGGACCCCGCAACCTCCTCCCGGAGCCCCGGGGAGACCGCCGCA
CCCGGTGCAGCGGCGTCGTCGTCCGCCTCCACCCCGGCCGGGGGTGCCGACCGCGCGAGC
GCGCCCGGGTCCCAGGCGGCCCTGCGGCTGGCCAACCGGCGGCGCGTGGTGGACGCTGTG
CGCGGTCTGGGCGCCGTGACCCAGGCGAGGATCGCGCGGGAGACGGCCCTGGCTCCGTCG
ACCGTGTCCTCGATCGTGAAGGAGCTCACCGCGTGCGATCTGCTGACCGTGGAACCGGAC
CACGGCGGGCGGCGGGGACAGCGGGTGCGTTTCAGCGCGAGCGCCGGCCACCTCCTGGGC
GTGGACGTGGGTCACCGTCACGTCGCGGTGGCTCTCGCGGACCTCAACCTGGAGATCCTC
GCCCAGCGGCGCGCGGAGCTCTCCCCGCGGCACGGTGCCCGGGAGGTGCTGGATGTCGCG
CGGGGCATGGCCGACGAGCTGCGGGACGAGCTCGGGATCCCGGCGGAGCGGGTGCTGCGC
GCCGGAATCGGCCTGCCCGCCCCGGTGGACGCGCAGGGTCGGGGACTCGACTCAGCGGTG
ATCCTGCCCCACTGGTCCGGGCTCGACGTGCGGGAACTCGCCGCCCACGTGCTGGGATGC
CCCGTGGTGGTGGAGAACGACGCGAACGCCGGTGCGGTGAGCGAGCACGCCCTCGGCGCG
GGCCGCGGCGCCCGCGACATGGCCTACCTCAAGGTCTCCCACGGCGTGGGCGCCGGGCTG
GTCCTGGGTGGCACCCTGTACCGCGGAGCCACCGGGGCGGCCGGGGAGATCGGGCACATC
ACCCTGGACGAGCGCGCCGGGCTGTGCCGCTGCGGCAACCGCGGCTGCCTGGAGACGTTC
GTGTCCTCCGCCGCGGTGCTCGAGCTCGTGCGTCCGTCCGGGCAGCCCGTGGAGAGCGTC
TCGGACGTCGTGGACGCGGCCCTCGCCGGGGACCCCGGGTGCTCCAGGGTGGTCTCGGAC
ACCGGCCGGGTGATCGGCGTGGTGGTCGCGCAGCTGTGCAACCTGCTCAACCCCGAGCTC
GTGGTGCTCGGCGGCGACCTCGCCCGCGCGGGAGAGCTGCTGCTCGAGCCCCTGCGCACG
GCCGTGGACCGGTACACGCTCCACGGCAGCTCCCCGGTGCGGGTGGTGCCCTCCGAGCTC
GGACCCCGGGCGCACCTCACGGGGGCGCTGCTGCTGGCCCGCGAGGACACTCCCCTGCCG
GTATGA


>KRH_00210 putative NagC family transcriptional regulator
MEYSPPDPATSSRSPGETAAPGAAASSSASTPAGGADRASAPGSQAALRLANRRRVVDAV
RGLGAVTQARIARETALAPSTVSSIVKELTACDLLTVEPDHGGRRGQRVRFSASAGHLLG
VDVGHRHVAVALADLNLEILAQRRAELSPRHGAREVLDVARGMADELRDELGIPAERVLR
AGIGLPAPVDAQGRGLDSAVILPHWSGLDVRELAAHVLGCPVVVENDANAGAVSEHALGA
GRGARDMAYLKVSHGVGAGLVLGGTLYRGATGAAGEIGHITLDERAGLCRCGNRGCLETF
VSSAAVLELVRPSGQPVESVSDVVDAALAGDPGCSRVVSDTGRVIGVVVAQLCNLLNPEL
VVLGGDLARAGELLLEPLRTAVDRYTLHGSSPVRVVPSELGPRAHLTGALLLAREDTPLP
V

NBRC No.	clone name	start	stop	length(bp)
G09-001-002	MDFO1S8502J22	24,628	62,283	37,656
G09-002-001	MDFO1S8501K15	2,744	37,820	35,077

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.