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CDS Information : KRH_00250

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close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 32,787 / 31,339 / -
Location complement(31339..32787)
Type CDS
Length 1,449 bp (482 aa)

close this sectionAnnotation

Product peptide transporter
Gene name
Functional category Environmental Information and Cellular Processing
- Membrane Transport
EC number
Note Belongs to the proton-dependent oligopeptide transporter (POT) family (TC 2.A.17).
KEGG pathway KO:K03305
Sequence feature
References Uniprot:P0C2U3 Pubmed:8157671
Uniprot:O07380 Pubmed:9172341

close this sectionRelated links to external database

UniProtB2GIY1
INSDBAG28372.1 (DDBJ GenBank EMBL)
UniParcUPI0001733D9E

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=1e-149Q0S697_RHOSRDi/tripeptide permeaseAlignment
2E=1e-145A3TPM3_9MICOPutative dipeptide/tripeptide permeaseAlignment
3E=1e-143Q4JUU9_CORJKPutative dipeptide/tripeptide permeaseAlignment
4E=1e-141A1R115_ARTATDipeptide/tripeptide permease
Peptide:H+ symporter		Alignment
5E=1e-140Q6AH45_LEIXXPeptide transporter, PTR familyAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR000109 Oligopeptide transporter (Domain)
 [89-434]  1.3e-30 PF00854
PF00854   PTR2
IPR000109 TGF-beta receptor, type I/II extracellular region (Family)
 [9-477]  1.7e-108 PTHR11654
PTHR11654   OLIGOPEPTIDE TRANSPORTER-RELATED
 [152-164]  PS01023
PS01023   PTR2_2
 [89-434]  1.3e-30 PF00854
PF00854   PTR2
IPR005279 Amino acid/peptide transporter (Family)
 [8-478]  2e-148 TIGR00924
TIGR00924   yjdL_sub1_fam: amino acid/peptide transport
 [9-477]  1.7e-108 PTHR11654:SF6
PTHR11654:SF6   DI-TRIPEPTIDE ABC TRANSPORTER
IPR007114 Major facilitator superfamily (Family)
 [1-475]  14.483 PS50850
PS50850   MFS
IPR016196 Major facilitator superfamily, general substrate transporter (Domain)
 [1-476]  3.2e-34 SSF103473
SSF103473   MFS general substrate transporter
IPR018456 PTR2 family proton/oligopeptide symporter, conserved site (Conserved_site)
 [152-164]  PS01023
PS01023   PTR2_2
IPR020846 Major facilitator superfamily domain (Domain)
 [1-475]  14.483 PS50850
PS50850   MFS
SignalP No significant hit
TMHMM 
 [31-48]  Transmembrane (i-o) [58-80]  Transmembrane (o-i) [93-112]  Transmembrane (i-o) [116-138]  Transmembrane (o-i) [151-173]  Transmembrane (i-o) [177-199]  Transmembrane (o-i) [220-242]  Transmembrane (i-o) [246-268]  Transmembrane (o-i) [281-303]  Transmembrane (i-o) [325-347]  Transmembrane (o-i) [360-378]  Transmembrane (i-o) [388-410]  Transmembrane (o-i) [423-445]  Transmembrane (i-o) [450-472]  Transmembrane (o-i)
Transmembrane 14   
SOSUI 
 [48-70]  Transmembrane [95-117]  Transmembrane [152-174]  Transmembrane [179-200]  Transmembrane [222-244]  Transmembrane [248-269]  Transmembrane [280-302]  Transmembrane [328-350]  Transmembrane [358-378]  Transmembrane [387-409]  Transmembrane [418-440]  Transmembrane [455-477]  Transmembrane
Transmembrane 12   

close this sectionCalculated information (Amino acid sequence)

size of protein 482 amino acids
molecular mass 51,717.39 Da
pI 9.12
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.6
(51aa)		10
(48aa)		14.3
(69aa)		6.6
(32aa)		6.8
(33aa)		1.5
(7aa)		3.9
(19aa)		3.3
(16aa)		11
(53aa)		5
(24aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6
(29aa)		0.6
(3aa)		2.1
(10aa)		2.5
(12aa)		3.5
(17aa)		2.3
(11aa)		1.2
(6aa)		3.7
(18aa)		2.5
(12aa)		2.5
(12aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-001-002 MDFO1S8502J22 24,628 62,283 37,656
G09-002-001 MDFO1S8501K15 2,744 37,820 35,077

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.