CDS Information : KRH_00400

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	45,274 / 45,894 / +
Location	45274..45894
Type	CDS
Length	621 bp (206 aa)

Product	superoxide dismutase
Gene name	sodA
Functional category	Environmental Information and Cellular Processing - Others
EC number	1.15.1.1
Note	Fe/Mn-binding enzyme.
KEGG pathway	KO:K04564
Sequence feature
References	Uniprot:P17670 Pubmed:9933629,8674528

UniProt	B2GJF8
INSD	BAG28387.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733DAD

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=3e-83 A0JWP6_ARTS2 Superoxide dismutase Alignment 2 E=9e-83 Q0PRD6_9MICC Superoxide dismutase Alignment 3 E=1e-82 A4V8N5_9MICC Superoxide dismutase Alignment 4 E=3e-82 A1R6G9_ARTAT Superoxide dismutase Alignment 5 E=9e-80 A5CRT8_CLAM3 Superoxide dismutase Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR001189 Manganese and iron superoxide dismutase (Family) SSF46609   Fe,Mn superoxide dismutase (SOD), N-terminal domain PR01703   MNSODISMTASE PS00088   SOD_MN PTHR11404   SUPEROXIDE DISMUTASE 2 PF02777   Sod_Fe_C PF00081   Sod_Fe_N SSF54719   Fe,Mn superoxide dismutase (SOD), C-terminal domain PD000475   SODM_MYCPA_P53647; IPR019831 Manganese/iron superoxide dismutase, N-terminal (Domain) SSF46609   Fe,Mn superoxide dismutase (SOD), N-terminal domain PF00081   Sod_Fe_N IPR019832 Manganese/iron superoxide dismutase, C-terminal (Domain) SSF54719   Fe,Mn superoxide dismutase (SOD), C-terminal domain PF02777   Sod_Fe_C IPR019833 Manganese/iron superoxide dismutase, binding site (Binding_site) PS00088   SOD_MN
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	206 amino acids
molecular mass	22,828.58 Da
pI	5.02
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 14.1 (29aa) 4.4 (9aa) 8.3 (17aa) 5.3 (11aa) 5.3 (11aa) 2.4 (5aa) 3.9 (8aa) 2.4 (5aa) 7.3 (15aa) 4.4 (9aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.9 (8aa) 0 (0aa) 5.8 (12aa) 4.4 (9aa) 3.9 (8aa) 5.3 (11aa) 4.4 (9aa) 1.9 (4aa) 6.8 (14aa) 5.8 (12aa)

>KRH_00400 superoxide dismutase
ATGGCTGAAAAGTTCACTCTCCCCGACCTCCCGTACGACTACGCCGCGCTGGAGCCGCAC
ATCTCGGCCCAGATCATGCAGCTGCACCACGACAAGCACCACAACACGTACGTGACCGGT
GCTAACACCGCGCTGGAGAAGATGGAGGAGGCCCGTGCCAACGGTGACGCCGCCGGCGCC
GCCAAGCTCTCCAAGGACCTGCAGTTCAACCTGGGTGGTCACATCAACCACTCCATTTTC
TGGAAGAACCTGTCCCCCGAGGGTGGCGACAAGCCCACCGGCGAGCTCGCCGCGGCGATC
GACAACTTCTTCGGCTCCTTCGACGGCTTCCGGGACCACTTCACCGCTGCCGCCACGAGC
ATCCAGGGCTCCGGCTGGGCCATTCTCGCGTACGAGCCCGTTGCCGGGAACCTGGTGATC
GAGCAGATGTACGACCAGCAGAACGGTGTCCCCGTGGCCACCATCCCGCTGCTGCAGCTG
GACATGTGGGAGCACGCCTTCTACCTCGACTACCAGAACGTCAAGGCGGACTACGTCAAG
GCTTTCTGGAACATCGTGAACTGGGCGGATGTCTCCGAGCGTTTCGAGAAGGCGCGCGCC
GGGGCCAAGTCCCTCATCTGA


>KRH_00400 superoxide dismutase
MAEKFTLPDLPYDYAALEPHISAQIMQLHHDKHHNTYVTGANTALEKMEEARANGDAAGA
AKLSKDLQFNLGGHINHSIFWKNLSPEGGDKPTGELAAAIDNFFGSFDGFRDHFTAAATS
IQGSGWAILAYEPVAGNLVIEQMYDQQNGVPVATIPLLQLDMWEHAFYLDYQNVKADYVK
AFWNIVNWADVSERFEKARAGAKSLI

NBRC No.	clone name	start	stop	length(bp)
G09-001-002	MDFO1S8502J22	24,628	62,283	37,656

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.