CDS Information : KRH_04340

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Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	472,843 / 472,121 / -
Location	complement(472121..472843)
Type	CDS
Length	723 bp (240 aa)

Product	putative GntR family transcriptional regulator
Gene name
Functional category	Genetic Information Processing - Transcription
EC number
Note	Belongs to the GntR transcriptional regulator family, which includes the gluconate operon transcriptional repressor GntR of Bacillus subtilis (P10585), the fatty acyl responsive regulator FarR of Escherichia coli (P13669) and the histidine utilization repressor HutC of Pseudomonas putida (P22773).
KEGG pathway
Sequence feature
References	Family/Domain:gntR_DBD

UniProt	B2GGS6
INSD	BAG28781.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733F1C

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=2e-60 Q6NKK7_CORDI Putative regulatory protein Alignment 2 E=4e-50 Q0SB05_RHOSR Transcriptional regulator, GntR family protein Alignment 3 E=3e-49 A0K097_ARTS2 Transcriptional regulator, GntR family Alignment 4 E=1e-48 A0QQ19_MYCS2 Bacterial regulatory protein, GntR family protein Alignment 5 E=2e-48 Q1B3P6_MYCSS GntR-like protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000524 Bacterial regulatory protein GntR, HTH (Domain) PR00035   HTHGNTR PS50949   HTH_GNTR PF00392   GntR SM00345   no description IPR011711 GntR, C-terminal (Domain) PF07729   FCD IPR011991 Winged helix repressor DNA-binding (Domain) G3DSA:1.10.10.10   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	240 amino acids
molecular mass	26,139.58 Da
pI	5.77
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 15.8 (38aa) 6.7 (16aa) 10.8 (26aa) 4.6 (11aa) 1.7 (4aa) 1.7 (4aa) 4.2 (10aa) 2.9 (7aa) 5.8 (14aa) 7.5 (18aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5 (12aa) 0.4 (1aa) 0.4 (1aa) 4.2 (10aa) 1.3 (3aa) 0.4 (1aa) 4.2 (10aa) 9.2 (22aa) 6.3 (15aa) 7.1 (17aa)

>KRH_04340 putative GntR family transcriptional regulator
ATGAGCGCTGCACCCGCCTACACGGTGGTGCTGGACTGGCTCGAACGGCAGCTGCGTTCG
GGAGCGCTGCGCGTGGGCGACAAGCTGCCCGCGGAGCGCACGCTGGCCGAGGACTTCGGG
ATCTCCCGCGCCTCGGTGCGGGAGGCCGTGCGGATCCTCGCGGCCATGGGCCTGGTGCGC
TCGGCCACGGGGTCCGGCCCGCAGTCCGGGGCCACGGTCATCTCGGACCCCTCCGCCGCC
CTGGGCTGGGCGCTGCGGATGCACATCGCCACCCGGTCCCTGCCGGTCGCGGACGTGGTG
AGCGCCCGTGTGCTTCTGGAGACGCAGTCGAGCCTGGACGCGGCATCGTCGACATGCCCC
GAGCGCGAGGAAATCTTGGAGCAGGCCGCGCAGATGCTCGACCGCATGGACGACCCTGCG
GTGGACGACGAGCAGTTCCACATCCTGGACGCGCAGTTCCACCTGCACCTGGCCTCGCTG
GGCGGCAACGTGGTGCTCGAGACCATCATGGCGTCCCTGCGGGAGGCCACCATCGGCTAC
GTCCAGGAGACCGTGGCGGGAACCTCCGACTGGCCCGCGATCCGCGCCCGCCTGCAGGAG
CAGCACCACGCGATCCACCGGGCCACCGAGGCCCGCGACGGCGCTCTGGCCGCCCGGCTG
CTGCGCGAGCACATCATGTGGTTCTACGGCCACGCACCGGACGCGCCTCGCCACCGGGAG
TAG


>KRH_04340 putative GntR family transcriptional regulator
MSAAPAYTVVLDWLERQLRSGALRVGDKLPAERTLAEDFGISRASVREAVRILAAMGLVR
SATGSGPQSGATVISDPSAALGWALRMHIATRSLPVADVVSARVLLETQSSLDAASSTCP
EREEILEQAAQMLDRMDDPAVDDEQFHILDAQFHLHLASLGGNVVLETIMASLREATIGY
VQETVAGTSDWPAIRARLQEQHHAIHRATEARDGALAARLLREHIMWFYGHAPDAPRHRE

NBRC No.	clone name	start	stop	length(bp)
G09-002-014	MDFO1S8502J04	458,304	501,015	42,712

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.