CDS Information : KRH_04490

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	492,811 / 490,670 / -
Location	complement(490670..492811)
Type	CDS
Length	2,142 bp (713 aa)

Product	penicillin-binding protein
Gene name
Functional category	Environmental Information and Cellular Processing - Cellular Processes
EC number
Note
KEGG pathway	KO:K03693
Sequence feature
References	Uniprot:P72351 Pubmed:8626300,10926828 Uniprot:Q9F9V7 Pubmed:10582900

UniProt	B2GH44
INSD	BAG28796.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733F5B

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=1e-163 A1RA03_ARTAT Penicillin-binding protein Alignment 2 E=1e-162 A0K0T1_ARTS2 Glycosyl transferase, family 51 precursor Alignment 3 E=1e-155 A0K0F4_ARTS2 Glycosyl transferase, family 51 precursor Alignment 4 E=1e-153 A1RA49_ARTAT Penicillin-binding protein Alignment 5 E=1e-127 A6W530_KINRA Glycosyl transferase family 51 precursor Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR001264 Glycosyl transferase, family 51 (Domain) PF00912   Transgly PD001895   Q6AH80_BBBBB_Q6AH80; IPR001460 Penicillin-binding protein, transpeptidase (Domain) PF00905   Transpeptidase IPR012338 Beta-lactamase-type transpeptidase fold (Domain) G3DSA:3.40.710.10   no description SSF56601   beta-lactamase/transpeptidase-like
SignalP	Bacteria, Gram-positive
TMHMM	Transmembrane 1
SOSUI	Transmembrane 1

size of protein	713 amino acids
molecular mass	75,778.61 Da
pI	5.08
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 10.2 (73aa) 7.2 (51aa) 6.2 (44aa) 4.8 (34aa) 2.4 (17aa) 1.3 (9aa) 4.8 (34aa) 2.8 (20aa) 9.7 (69aa) 9.3 (66aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 7 (50aa) 0.8 (6aa) 6.6 (47aa) 5.3 (38aa) 3.6 (26aa) 4.8 (34aa) 0.7 (5aa) 3.2 (23aa) 5.3 (38aa) 4.1 (29aa)

>KRH_04490 penicillin-binding protein
ATGGCATCACGCAACAACTCGGGCTCCGAGCCCACGTCGGTCCTGGGCAACGTCGTCGCG
TTCATCGCCGTCGCCGTGGTCACCGGAGTGGTGGCGGCCGGACTCCTGGTACCCCCCGCC
GCGGCCGCCGGGCTGGCCGCCAACGCGTCCGTGGGCTGGTTCAAGTCCCTGCCCGCGAAC
ATGGAGTCCGGACCCGTCTCGGAGGCCTCCACCGTGGTGGCCAAGGACGGCACCGAGGTG
GCCAAGTTCTTCGCGCAGAACCGTGATCCCGTGCCGCTGGACCAGATCTCCCCGAACATG
CGCAACGCGCTGCTGTCCATCGAGGACCGCGACTTCTACGACCACGGCGGCGTGGACCCG
TGGGGCATCGTGCGCGCCATGGGCAACAACCTGCTGCGCCCCAGCACCCGCCAGGGTGCC
TCCACCATCACGCAGCAGTACGTCAACAACCTGATCATCGACCAGCAGGTCCGGGCCGGT
GAGCAGGCCAGCACCATCGGTGCCGACAAGGGCGTGGTGGACAAGATCAAGGAGATCAAG
CTCGCCCTGTCCATGGAGCAGGAGAAGTCCAAGGACGAGATCCTGGAGGGCTACCTCAAC
ATCGTGCTCTTCGGCGGCTCCAACTACGGCGTGGAGGCCGCGTCCCAGTACTTCTGGGGC
ATCCCGGCGTCCAAGCTGAGCATCGCCCAGTCCGCCACGCTCGCGGGCATGGTGCAGTCC
CCCAACTACTACAATCCCGAGGTCAACCCCGAGGCGTCCACGCAGCGGCGCAACGTGGTG
CTCGACACCATGGTCCAGACCGGGTCCATCACGCAGCAGCAGGCGGACCAGGCGGCCAAG
GAGCCCATGAAGCTGGACATCCACCACACCAACTCGGGGTGCTCCGCGGCCAAGACGGCC
CCGTACTTCTGCGACTACGTGGAGAACGAGGTCATGCAGTCGGACTCGTTCGGCACCACC
CCGGAGGAGCGGCTGGCCACGCTGCAGCGCGGTGGCCTGACCATCCGCACCACCCTGGAC
CCCAAGGCCCAGAAGGCGGCGGACACCCAGGTCAACGCCACGCAGCCCAAGGACAACAAC
CCGGACAGCGTCTCCACGTCCCTGATCTCCCTGGAGCCGGGCAACGGGCACATCGTGTCC
ATGGCGCAGAACACCAACTACTCCGCCGCGGAGGGCATGTCCAACACCACGTACAACTTC
AACGTGGACACCTCCATGGGCGGGGCCGGCGGCTTCCAGGTGGGCTCCACGTTCAAGCCG
TTCACCCTGGCCCAGTGGATCAACTCGGGCAAGGGCGTGAAGGCCAGCATCGACGCCCGC
AGGCTGAGCTACCCCGCGGACTACCAGTGGAAGGCCTCGTGCCTGCCCAACGGGTACAAG
ATCGAGCCCGGCACGGACGGCAACGGCCTCTCGTTCCAGAACGCCACCGAGGGCTACAAC
AAGGTGATGGACGTGGACTACGGCATCTACAACTCCATCAACTCCGCCCTGTACGCCATG
GCCGCGGACCTGGACCTGTGCCAGATCGGCGAGATCACCAAGGCGCTGGGCATCCACGAC
GGCAAGACCGGCGACCCCGTGGACACCACGGTGCTGTCCTCGCTGCTGGGTGGTTCCGCG
GACATCTCCCCCATGACCATGGCCCGCGCGTTCTCCGCGTTCGCCAACGACGGCATGATG
TGCGAGCCGCGCTCCATCACCAGGGTCACGGACCGTTCCGGCAAGAACTACTCGGTGCCC
GGTGACAAGTGCCAGCAGGTCATCAAGAAGGAGGTCGCGCAGGGCGTGAACTACGTCCTG
GAGCAGGTGATCGTGAAGGGCTCCGCGTACCAGCGGGGCATCGGACTGCCCAACGCCTCC
GCCGCCAAGACGGGCACTACCGACAACTCCACCCAGACCTGGATGCTCGGCTACACCAAG
GGTCTGTCCACGGCCTCGTGGGTGGGCAACTACCAGTCCGGCTCCCGCTCGCTGAACGGG
CTGAACATCGGCGGCAAGCGCGGCGGCTCCGGCACCGAGTGGGTGGACGGCGCCACGTAC
GCGGGCAGCCAGTGGCAGAACTACATGAAGGAGATCGCGCCGAACTACAGCACGGCGCCG
TTCTCCGACCCGCCCTCGAACGTGCTGTCCACCCGCAAGTGA


>KRH_04490 penicillin-binding protein
MASRNNSGSEPTSVLGNVVAFIAVAVVTGVVAAGLLVPPAAAAGLAANASVGWFKSLPAN
MESGPVSEASTVVAKDGTEVAKFFAQNRDPVPLDQISPNMRNALLSIEDRDFYDHGGVDP
WGIVRAMGNNLLRPSTRQGASTITQQYVNNLIIDQQVRAGEQASTIGADKGVVDKIKEIK
LALSMEQEKSKDEILEGYLNIVLFGGSNYGVEAASQYFWGIPASKLSIAQSATLAGMVQS
PNYYNPEVNPEASTQRRNVVLDTMVQTGSITQQQADQAAKEPMKLDIHHTNSGCSAAKTA
PYFCDYVENEVMQSDSFGTTPEERLATLQRGGLTIRTTLDPKAQKAADTQVNATQPKDNN
PDSVSTSLISLEPGNGHIVSMAQNTNYSAAEGMSNTTYNFNVDTSMGGAGGFQVGSTFKP
FTLAQWINSGKGVKASIDARRLSYPADYQWKASCLPNGYKIEPGTDGNGLSFQNATEGYN
KVMDVDYGIYNSINSALYAMAADLDLCQIGEITKALGIHDGKTGDPVDTTVLSSLLGGSA
DISPMTMARAFSAFANDGMMCEPRSITRVTDRSGKNYSVPGDKCQQVIKKEVAQGVNYVL
EQVIVKGSAYQRGIGLPNASAAKTGTTDNSTQTWMLGYTKGLSTASWVGNYQSGSRSLNG
LNIGGKRGGSGTEWVDGATYAGSQWQNYMKEIAPNYSTAPFSDPPSNVLSTRK

NBRC No.	clone name	start	stop	length(bp)
G09-001-022	MDFO1S8501D08	484,315	519,590	35,276
G09-002-014	MDFO1S8502J04	458,304	501,015	42,712

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.