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CDS Information : KRH_05290

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close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 577,702 / 579,228 / +
Location 577702..579228
Type CDS
Length 1,527 bp (508 aa)

close this sectionAnnotation

Product catalase
Gene name katA
Functional category Environmental Information and Cellular Processing
- Others
EC number 1.11.1.6
Note
KEGG pathway map:00380 KO:K00429
Sequence feature
References Uniprot:P29422 Pubmed:12454454
Uniprot:Q59714 Pubmed:9358059

close this sectionRelated links to external database

UniProtB2GHN7
INSDBAG28876.1 (DDBJ GenBank EMBL)
UniParcUPI0001734083

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=0CATA_MICLUCatalaseAlignment
2E=0Q47PD5_THEFYCatalaseAlignment
3E=0A5VCQ9_9SPHNCatalaseAlignment
4E=0Q1QPY3_NITHXCatalaseAlignment
5E=0Q1QZE8_CHRSDCatalaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR002226 Catalase haem-binding site (Binding_site)
 [337-345]  PS00437
PS00437   CATALASE_1
IPR002226 Catalase (Domain)
 [48-64]  PS00438
PS00438   CATALASE_2
 [337-345]  PS00437
PS00437   CATALASE_1
IPR002226 Catalase (Family)
 [48-64]  PS00438
PS00438   CATALASE_2
 [25-48]  3.3e-64 PR00067 [87-105]  3.3e-64 PR00067 [108-125]  3.3e-64 PR00067 [127-145]  3.3e-64 PR00067 [292-319]  3.3e-64 PR00067 [324-350]  3.3e-64 PR00067
PR00067   CATALASE
 [337-345]  PS00437
PS00437   CATALASE_1
 [14-483]  PD000510
PD000510   CATA_MICLU_P29422;
 [86-482]  1.9e-205 PTHR11465
PTHR11465   CATALASE
IPR011614 Catalase, N-terminal (Domain)
 [12-394]  6.9e-260 PF00199
PF00199   Catalase
 [7-501]  4.2e-196 G3DSA:2.40.180.10
G3DSA:2.40.180.10   no description
IPR018028 Catalase related subgroup (Domain)
 [25-48]  3.3e-64 PR00067 [87-105]  3.3e-64 PR00067 [108-125]  3.3e-64 PR00067 [127-145]  3.3e-64 PR00067 [292-319]  3.3e-64 PR00067 [324-350]  3.3e-64 PR00067
PR00067   CATALASE
IPR020835 Catalase-like domain, haem-dependent (Domain)
 [4-483]  5.1e-206 SSF56634
SSF56634   Heme-dependent catalases
 [86-482]  1.9e-205 PTHR11465
PTHR11465   CATALASE
IPR024708 Catalase active site (Active_site)
 [48-64]  PS00438
PS00438   CATALASE_2
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 508 amino acids
molecular mass 57,501.58 Da
pI 5.02
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.3
(37aa)		6.1
(31aa)		5.5
(28aa)		2.6
(13aa)		5.9
(30aa)		2.4
(12aa)		5.9
(30aa)		3
(15aa)		8.3
(42aa)		5.7
(29aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.1
(36aa)		0
(0aa)		5.9
(30aa)		4.1
(21aa)		3.1
(16aa)		3.7
(19aa)		3
(15aa)		6.3
(32aa)		6.5
(33aa)		7.7
(39aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-001-025 MDFO1S8502A18 550,724 585,697 34,974
G09-002-016 MDFO1S8501I12 571,943 610,156 38,214

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.