CDS Information : KRH_05400

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	592,756 / 593,493 / +
Location	592756..593493
Type	CDS
Length	738 bp (245 aa)

Product	putative oxidoreductase
Gene name
Functional category	Unclassified - putative function (general)
EC number
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR002198

UniProt	B2GI32
INSD	BAG28887.1 (DDBJ GenBank EMBL)
UniParc	UPI00017340C1

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=6e-56 A5CST2_CLAM3 Putative short chain dehydrogenase/oxidoreductase Alignment 2 E=7e-51 Q6A722_PROAC Short chain dehydrogenase Alignment 3 E=3e-49 A4FQS9_SACEN Short-chain dehydrogenase/reductase SDR Alignment 4 E=8e-48 Q5YN63_NOCFA Putative short chain dehydrogenase Alignment 5 E=1e-46 Q4JU59_CORJK Putative dehydrogenase related to short-chain alcohol dehydrogenases Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR002198 Short-chain dehydrogenase/reductase SDR (Domain) PTHR19410   SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER PR00080   SDRFAMILY PF00106   adh_short IPR002198 Short-chain dehydrogenase/reductase SDR (Family) PS00061   ADH_SHORT PF00106   adh_short PR00080   SDRFAMILY IPR002347 Glucose/ribitol dehydrogenase (Family) PR00081   GDHRDH PTHR19410   SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER IPR016040 NAD(P)-binding domain (Domain) SSF51735   NAD(P)-binding Rossmann-fold domains G3DSA:3.40.50.720   no description IPR020904 Short-chain dehydrogenase/reductase, conserved site (Conserved_site) PS00061   ADH_SHORT
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	245 amino acids
molecular mass	26,516.72 Da
pI	4.81
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 15.1 (37aa) 10.2 (25aa) 6.5 (16aa) 3.7 (9aa) 2.9 (7aa) 1.2 (3aa) 4.5 (11aa) 2.4 (6aa) 7.3 (18aa) 6.1 (15aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.7 (14aa) 0 (0aa) 1.6 (4aa) 4.9 (12aa) 1.2 (3aa) 0.8 (2aa) 2 (5aa) 9.4 (23aa) 4.9 (12aa) 9.4 (23aa)

>KRH_05400 putative oxidoreductase
ATGAGTGAACAGACCGCACAGCAGAGCACCCCTCGCACCGCCCTGGTCACGGGCGCGACC
CGCGGCATCGGCCGCGCGATCGCCCGGGACCTCGCCGCCGACCACGTGGTGTTCGTGGGA
GGCCGCTCGGCCGAGGACGTCGAGCGCCTGCGCGCCGAGCTCGCCGGCGTGGGCCCCGGA
ACCCGCCCGTTTGTGGCGGACGTGACCGACGACGAGCAGGCGGCCGCCGCGTGGGCGCCC
CTGCGCGAGGAGTTCGGCGCCCTGAACGTCTTGGTGCACTCCGCGGGCATCGCACCGCAG
TCCCTCGTGGCGGATGCCCCGCGTGAGATGTGGGAGCAGATCTTCGACGTGAACGTGATC
TCCGTGGCGCAGCTGACCCGGCTCACCCTGCCCGAGCTGCGCGCCGCGCAGGGGGACGTG
GTGGCCATCAACTCCGGCTCGGGGTTCACGTCCAACAAGTCGGCGGCGCTGTACTCGGGC
ACCAAGTTCGCGCTGCGCGCGTTCACGGACGCCCTGCGCGAGGAGGAGCGCGAGCACGGC
GTGCGCGTGGCCTCGGTCCACCCGGGCCGCGTGGCCACGGACATGCAGGAGCAGCTGCAC
GAGTACATGGGCCGGGAGTACCGCCCGGAGGAGTGGATCCAGCCCGAGCAGATCGCCGCG
GCGGTCCGCATGGCGGTGGACGCCGAGCGCACCTCCGAGGTGGAGGTCATCTCCGTGCGC
CCCTCCGGGATGCGCTGA


>KRH_05400 putative oxidoreductase
MSEQTAQQSTPRTALVTGATRGIGRAIARDLAADHVVFVGGRSAEDVERLRAELAGVGPG
TRPFVADVTDDEQAAAAWAPLREEFGALNVLVHSAGIAPQSLVADAPREMWEQIFDVNVI
SVAQLTRLTLPELRAAQGDVVAINSGSGFTSNKSAALYSGTKFALRAFTDALREEEREHG
VRVASVHPGRVATDMQEQLHEYMGREYRPEEWIQPEQIAAAVRMAVDAERTSEVEVISVR
PSGMR

NBRC No.	clone name	start	stop	length(bp)
G09-002-016	MDFO1S8501I12	571,943	610,156	38,214
G09-002-017	MDFO1S8503H18	590,323	628,877	38,555

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.