CDS Information : KRH_05440

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	597,408 / 598,427 / +
Location	597408..598427
Type	CDS
Length	1,020 bp (339 aa)

Product	putative polyprenyl diphosphate synthase
Gene name
Functional category	Metabolism - Lipid Metabolism
EC number	2.5.1.-
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR000092 Uniprot:O82832 Pubmed:9692900

UniProt	B2GI36
INSD	BAG28891.1 (DDBJ GenBank EMBL)
UniParc	UPI00017340C5

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=1e-113 A1R988_ARTAT Trans-hexaprenyltranstransferase Heptaprenyl diphosphate synthase Alignment 2 E=1e-111 A0JZN8_ARTS2 Trans-hexaprenyltranstransferase Alignment 3 E=5e-87 A6W5P9_KINRA Polyprenyl synthetase Alignment 4 E=2e-85 A5CUV4_CLAM3 Putative polyprenyl diphosphate synthase Alignment 5 E=1e-84 Q9F2X8_STRCO Putative polyprenyl diphosphate synthase Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000092 Polyprenyl synthetase (Family) PS00444   POLYPRENYL_SYNTHET_2 PTHR12001   GERANYLGERANYL PYROPHOSPHATE SYNTHASE PF00348   polyprenyl_synt IPR008949 Terpenoid synthase (Domain) SSF48576   Terpenoid synthases G3DSA:1.10.600.10   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	339 amino acids
molecular mass	35,545.36 Da
pI	4.5
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 16.5 (56aa) 8.8 (30aa) 12.7 (43aa) 4.4 (15aa) 1.5 (5aa) 0.9 (3aa) 4.1 (14aa) 2.4 (8aa) 8.6 (29aa) 5.3 (18aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.7 (16aa) 0 (0aa) 1.8 (6aa) 3.2 (11aa) 1.2 (4aa) 1.5 (5aa) 3.2 (11aa) 5.6 (19aa) 7.1 (24aa) 6.5 (22aa)

>KRH_05440 putative polyprenyl diphosphate synthase
TTGCGCCTGCCCGCAGGGTTTGAGCTCATTGCCCAGGACCCCCACCTGGGGCCCCTCATG
CTGGGCTCCCTCGAACGCGTGGAGCAGCGGCTGGGGGAGTCCGTGCGCTCCTCGGACCAG
CTCGCAGACGTCACCGCACACCACCTGCTCGCCGCCGGCGGCAAGCGGGTCCGCCCCCTG
CTGGCGCTGCTCGCCGCGGAGGTGGCCGGTTCCGTCAACGAGGACGTCATCGAGGCCGCC
GTGGTCGTGGAGCTCACCCACCTGGCCTCCCTCTACCACGACGACGTCATGGACTCCGCG
CCCATGCGCCGCGGCGTGGAGACCGCGCACACCGTGTGGGGCAACACCGTGGCCATCCTC
ACCGGGGACATGATCTTCGCCCGCGCCTCCGCCATGGTCTCCGCCCTGGGCCAGGAGTCC
CTGATGATTCAGGCCAGCACCTTCGAGCGGCTCGTGATCGGGCAGCTGCGCGAGACCACC
GGCCCCGCCGAGGGCCAGGACCCCCTGGAGCACTACCTTGAGGTGATCGCCGGCAAGACC
GGCTCCCTGATCGCCGCGAGCGGCCAGTACGGCGCGCTGCTGGGCGGGGCACCCCGCTCC
GTGGTGGACCTCATGGTGGTCTACGGCGAGAAGGTGGGCCTCGCGTTCCAGCTCGCGGAC
GACATCATCGACCTCACGGGCCACCCGGACGTCTCCGGCAAGACCCGCGGCACGGACCTG
CGCGAGGGCGTGGACACCCTTCCAGTGCTCCTGCTGCGCCGCGACGCCGCCGGCGATAAC
CCCGCCGCCGCGGCCTCCGCCCAGAACATCCTCCGTCTGATCGACGGGGACCTCACCGAC
GACGCCGCCCTGGCCACCGCCGTGGCGGCCGTCTCGGACCATCCCGCGGCCGCCGAGGCC
TGGCAGATCGCCAACCGGTGGGCGGACGAGGCCATCGAGGCACTGGCACCCCTGCCGGAG
TCCGTGGCCAAGGCGGCACTGATCGAATTCGCCCACGCGGTGGTCCACCGCAACGGCTGA


>KRH_05440 putative polyprenyl diphosphate synthase
MRLPAGFELIAQDPHLGPLMLGSLERVEQRLGESVRSSDQLADVTAHHLLAAGGKRVRPL
LALLAAEVAGSVNEDVIEAAVVVELTHLASLYHDDVMDSAPMRRGVETAHTVWGNTVAIL
TGDMIFARASAMVSALGQESLMIQASTFERLVIGQLRETTGPAEGQDPLEHYLEVIAGKT
GSLIAASGQYGALLGGAPRSVVDLMVVYGEKVGLAFQLADDIIDLTGHPDVSGKTRGTDL
REGVDTLPVLLLRRDAAGDNPAAAASAQNILRLIDGDLTDDAALATAVAAVSDHPAAAEA
WQIANRWADEAIEALAPLPESVAKAALIEFAHAVVHRNG

NBRC No.	clone name	start	stop	length(bp)
G09-002-016	MDFO1S8501I12	571,943	610,156	38,214
G09-002-017	MDFO1S8503H18	590,323	628,877	38,555

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.