CDS Information : KRH_05520

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	607,885 / 609,624 / +
Location	607885..609624
Type	CDS
Length	1,740 bp (579 aa)

Product	putative RNA polymerase ECF-type sigma factor
Gene name
Functional category	Genetic Information Processing - Transcription
EC number
Note
KEGG pathway	map:03020 KO:K03088
Sequence feature
References	Family/Domain:IPR007627

UniProt	B2GI44
INSD	BAG28899.1 (DDBJ GenBank EMBL)
UniParc	UPI0001734108

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=3e-61 A1R1H1_ARTAT Putative RNA polymerase sigma (70) factor Alignment 2 E=2e-56 A1SHD0_NOCSJ Sigma-70 region 2 domain protein Alignment 3 E=6e-55 A4FNN2_SACEN Putative uncharacterized protein Alignment 4 E=7e-54 A1R2U8_ARTAT Putative Sigma-70 region 2 domain protein Alignment 5 E=1e-52 A1R5Z7_ARTAT Putative RNA polymerase sigma factor domain protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR007627 RNA polymerase sigma-70 region 2 (Domain) PF04542   Sigma70_r2 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 (Domain) PF08281   Sigma70_r4_2 IPR013324 RNA polymerase sigma factor, regions 3 and 4 (Domain) SSF88659   Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 (Domain) SSF88946   Sigma2 domain of RNA polymerase sigma factors IPR014284 RNA polymerase sigma-70 (Domain) TIGR02937   sigma70-ECF: RNA polymerase sigma factor, s
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	579 amino acids
molecular mass	57,259.65 Da
pI	4.36
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 17.8 (103aa) 8.6 (50aa) 8.8 (51aa) 0.9 (5aa) 1.4 (8aa) 1 (6aa) 10.4 (60aa) 0.7 (4aa) 13.8 (80aa) 6.9 (40aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.8 (28aa) 0.9 (5aa) 1 (6aa) 3.6 (21aa) 1.2 (7aa) 0.3 (2aa) 1.2 (7aa) 5.9 (34aa) 5.7 (33aa) 5 (29aa)

>KRH_05520 putative RNA polymerase ECF-type sigma factor
ATGCCAGACAGTGCAGGTTCCGGGCCCCGTGATCCGGGGGTCCACACCGAGCACCCCGCG
AGCGACGAGCAGCTGCTCACCGCCGTGCGCGAGGGTGACTCCTCCGCGTTCGCCGAGCTC
TACGAACGCCACCGCGGGGCCGTGCTGGCCGTGGCCCGCATGCACTCCCGCAACGACGCC
GACGCCCAGGACCTCGTGTCCGAGGCCTTCACCCGCGTGCTGGGGCTGCTGCGCGAGGGC
CGCGGGCCCCGGCAGTTCCTGCGCGCCTACCTGGTCACTGCCGTCTCCCGCCTGGCCGCG
GACCGCGCGAACGACCTCACCCGCACCCGCCCCGAGGCACCCCAGCCCAACGGTCCGCTG
GACCGCGTGGAGCTCTTCGACGACCTCGTGGTCAAGCAGGTGGACTCCGCCGTGGTGGCG
CAAGCCTTCGCGAGCCTGCCGGAGCGCTGGCAGGAGATCCTGTGGTACCTCGAGGTCGAG
GGGCGCCGCCCGCGGCAGGTGGCCTCCGTGGTGGGCGTCCAGCCCAACGCCGTGTCCGCC
CTCGGCAAGCGCGCCCGCGAGGGGCTGCGCACCGCCTACATGCAGGAGCACGTCTCCGCG
CAGGCGCTGGAGGACTGCTACCAGTTCTCCTCCCAGCTGGGCGCCTTCGCCCGGGGCGCG
CTCACCCCCTCCCGCACCGCCGTGGTCCAGGACCACCTTGACGGCTGCCGCCGCTGCACC
GCCGAGTACCTCCAGCTCCAGGACCTCGGGCTCGGGCTGCGCGGCTGGATGCTGCCCGTG
CTCGCCGGGCTGCCCCTGTGGGGCGGGGCCGGCGGCCGGCTCGCGGAGTCCCTCGGAGGG
CTGCCGCTGCTCGGTGGTTCCCCCGCGCTCGCCGCCGCGGGAGGTGCCGGGGCCGGCACC
ACCGGGGCTGGCGGCACGGCCGGGGTTGTCGACGCCGCCGGGGTGCGCGGTCTCGCCGGG
ACGGGTGGCGCTGCCGGAGCTGCCGACGCCGCCGGGGCGGCCGCTGGAACGGCTGGAACG
GGCGGTGCCGCGGGGACGGGCGCCGCGGCGTCGGCCGCGGGATCCTCTGCGGCGGGCTCC
GCCGCGGGCGGACTCGGAGCGGTGCTGGGGTCCAGCACGGGGCTCGCGCTCGCCGTGGGC
GCGGTGCTCGTGGTCGGTGCCTCCACCGCGGGACTCGTGGCCCTGAACAGCGGTTCCGAG
GAGGCCCCGCCCACGGCCGCGGGCTCGGCCGAGCCGGGCGGAGCGGGCAGCCGTGCCGCG
GCGGAGCCTGGCAGGCAGGACCCCGCGAGCGGTGCGCCCGTACAGGGGGCCGCGCCCGGC
GGGAACGGCGCCGCCGTGCCGGACGCGGACCAGGCCCAGGGTGCGTCGGGTGCCGAGGCC
GCCCAGGACGCCGCGGTGGAGCGGTCCGAGTCCACCGCCCTGCCCGCCCCGTTCCTCCCG
GACGTCGACCCGGCCATCGTGGGCCCCGTGCCCGACCTGCCGGTGTCCGTGCCGTACCCC
ACCCTCCCGCGCGTGGATGGCGACCCCGTGCCGCCCGATCCCGTGGATCCAGAACCGGCG
AGCCCCGATCCGGTGAGCCCCGACCCGGTCGAGCCCACCCCCAGCCCCGTGCCCACCGTC
CCCGAGCCCACGCCGAGCCCGGGCGGCGGCGGTGCCACCCCCGCACCCACACCCACCCCT
TCCGACGGCTCGTGCCACTGGGTCCCCATACCCTGGGGCATCGAGGTCTGCATCCCGTAG


>KRH_05520 putative RNA polymerase ECF-type sigma factor
MPDSAGSGPRDPGVHTEHPASDEQLLTAVREGDSSAFAELYERHRGAVLAVARMHSRNDA
DAQDLVSEAFTRVLGLLREGRGPRQFLRAYLVTAVSRLAADRANDLTRTRPEAPQPNGPL
DRVELFDDLVVKQVDSAVVAQAFASLPERWQEILWYLEVEGRRPRQVASVVGVQPNAVSA
LGKRAREGLRTAYMQEHVSAQALEDCYQFSSQLGAFARGALTPSRTAVVQDHLDGCRRCT
AEYLQLQDLGLGLRGWMLPVLAGLPLWGGAGGRLAESLGGLPLLGGSPALAAAGGAGAGT
TGAGGTAGVVDAAGVRGLAGTGGAAGAADAAGAAAGTAGTGGAAGTGAAASAAGSSAAGS
AAGGLGAVLGSSTGLALAVGAVLVVGASTAGLVALNSGSEEAPPTAAGSAEPGGAGSRAA
AEPGRQDPASGAPVQGAAPGGNGAAVPDADQAQGASGAEAAQDAAVERSESTALPAPFLP
DVDPAIVGPVPDLPVSVPYPTLPRVDGDPVPPDPVDPEPASPDPVSPDPVEPTPSPVPTV
PEPTPSPGGGGATPAPTPTPSDGSCHWVPIPWGIEVCIP

NBRC No.	clone name	start	stop	length(bp)
G09-002-016	MDFO1S8501I12	571,943	610,156	38,214
G09-002-017	MDFO1S8503H18	590,323	628,877	38,555

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.