CDS Information : KRH_05530

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Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	609,683 / 610,588 / +
Location	609683..610588
Type	CDS
Length	906 bp (301 aa)

Product	putative protease HtpX
Gene name	htpX
Functional category	Environmental Information and Cellular Processing - Others
EC number	3.4.24.-
Note
KEGG pathway	KO:K03799
Sequence feature
References	HAMAP:MF_00188 Uniprot:P23894 Pubmed:12081643,16076848

UniProt	B2GI45
INSD	BAG28900.1 (DDBJ GenBank EMBL)
UniParc	UPI0001734109

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=1e-106 A6W5R0_KINRA Peptidase M48 Ste24p Alignment 2 E=1e-105 A1R944_ARTAT Putative Zn-dependent protease with chaperone function, HtpX-like protein Alignment 3 E=1e-105 A0JZI3_ARTS2 HtpX-2 peptidase. Metallo peptidase. MEROPS family M48B precursor Alignment 4 E=1e-102 A3THE5_9MICO Heat shock protein HtpX Alignment 5 E=1e-87 A7BBY4_9ACTO Putative uncharacterized protein Alignment
HAMAP Database:HAMAP:20070519	MF_00188   HTPX
InterPro Database:interpro:16.0	IPR001915 Peptidase M48, Ste24p (Family) PF01435   Peptidase_M48 IPR006025 Peptidase M, neutral zinc metallopeptidases, zinc-binding site (Binding_site) PS00142   ZINC_PROTEASE IPR016196 Major facilitator superfamily, general substrate transporter (Domain) SSF103473   MFS general substrate transporter
SignalP	Bacteria, Gram-positive
TMHMM	Transmembrane 4
SOSUI	Transmembrane 2

size of protein	301 amino acids
molecular mass	31,971.96 Da
pI	9.45
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 14.6 (44aa) 6 (18aa) 11.3 (34aa) 5.6 (17aa) 3 (9aa) 1 (3aa) 5.3 (16aa) 4 (12aa) 10.3 (31aa) 4.7 (14aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.3 (16aa) 0.7 (2aa) 4.3 (13aa) 3.3 (10aa) 2 (6aa) 1.7 (5aa) 2.7 (8aa) 7 (21aa) 3.7 (11aa) 3.7 (11aa)

>KRH_05530 putative protease HtpX
ATGCACCGGCACTACAACGGCCTCAAGACCGTCCTGCTCCTGGGCGGGATGTGGGTGGTG
CTGCTCGCGATCGGCTGGGCCATCGCCGGAGCCACCCGCAACTCGGCCTTCATCATGATC
TTCGCGGTGGTGGGCCTGCTCGGCACGGCCTACAGCTACTGGAACTCGGACAAGCTGGCC
ATCCGGTCCATGCGCGCCGTTCCCGTGACCCCGCAGCAGGCCCCGGCCATGTACCGGATC
GTGCACGAGCTGTCCCAGGCCGCCGGGCAGCCCATGCCCCGCCTGTTCATCGCCCCCACC
ATGAGCCCCAACGCCTTCGCCACGGGGCGCAACCCCGAGCACGCCGCGGTGTGCTGCACC
GAGGGCATCCTGCAGCTGCTCGACGAGCGCGAGCTGCGCGGCGTGCTGGGCCACGAGCTC
ATGCACGTGTACAACCGGGACATCCTGACCTCGTCGGTGGCGGCGGCCGTGGCGGGGATC
ATCACCTCCGCGGCCCAGATGCTGCAGTTCGCCGCGATCTTCGGCGGCGGACGGGGCAAC
GACAACCGCGGCGGCAACCCCCTGGTGGGTCTGCTGCTCGCCCTGCTGGCACCGCTGGCC
GCCACCGTGATCCAGCTGGCGATCTCCCGGACCCGCGAGTACGACGCGGACGAGGACGGC
TCCAAGCTCACCGGGGACCCCCTGGCCCTGGCCTCAGCGCTGCGCAAGATCGAGGGCGGG
GCCTCGCAGTTCCCCATGGACCCCGAGGACCAGAAGGTGGTCAACACGTCCCACCTGATG
ATCGCCAACCCGTTCCGCGGCGGCGCCGTCACCGGGCTCTTCCGCACGCACCCGGCCACG
GCGGACCGGATCGCACGGCTGGAGAACATGGCCCGCGCCGGGGGAGGCAATCCGGCAGGT
CGCTGA


>KRH_05530 putative protease HtpX
MHRHYNGLKTVLLLGGMWVVLLAIGWAIAGATRNSAFIMIFAVVGLLGTAYSYWNSDKLA
IRSMRAVPVTPQQAPAMYRIVHELSQAAGQPMPRLFIAPTMSPNAFATGRNPEHAAVCCT
EGILQLLDERELRGVLGHELMHVYNRDILTSSVAAAVAGIITSAAQMLQFAAIFGGGRGN
DNRGGNPLVGLLLALLAPLAATVIQLAISRTREYDADEDGSKLTGDPLALASALRKIEGG
ASQFPMDPEDQKVVNTSHLMIANPFRGGAVTGLFRTHPATADRIARLENMARAGGGNPAG
R

NBRC No.	clone name	start	stop	length(bp)
G09-002-017	MDFO1S8503H18	590,323	628,877	38,555

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.