CDS Information : KRH_05600

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	617,363 / 619,522 / +
Location	617363..619522
Type	CDS
Length	2,160 bp (719 aa)

Product	ATP-dependent DEAD-box RNA helicase DeaD Synonym: cold-shock DEAD-box protein A
Gene name	deaD Synonym: csdA
Functional category	Genetic Information Processing - Replication and Repair
EC number	3.6.1.-
Note
KEGG pathway	KO:K05592
Sequence feature
References	Uniprot:P0A9P6 Pubmed:8552679,12068815,15148362

UniProt	B2GI52
INSD	BAG28907.1 (DDBJ GenBank EMBL)
UniParc	UPI0001734110

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=0 A0JZF7_ARTS2 DEAD/DEAH box helicase domain protein Alignment 2 E=0 A1R913_ARTAT Putative ATP-dependent RNA helicase Alignment 3 E=0 Q6NHW2_CORDI DEAD-box helicase Alignment 4 E=0 A4QDC0_CORGB Putative uncharacterized protein Alignment 5 E=0 Q8FQ74_COREF Putative cold shock DEAD-box protein A Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site (Conserved_site) PS00039   DEAD_ATP_HELICASE IPR000629 ATP-dependent helicase, DEAD-box (Domain) PS00039   DEAD_ATP_HELICASE IPR001650 Helicase, C-terminal (Domain) PS51194   HELICASE_CTER SM00490   no description PF00271   Helicase_C IPR005580 DbpA, RNA-binding (Domain) PF03880   DbpA IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal (Domain) PF00270   DEAD IPR014001 DEAD-like helicases, N-terminal (Domain) SM00487   no description IPR014014 RNA helicase, DEAD-box type, Q motif (Domain) PS51195   Q_MOTIF IPR014021 Helicase, superfamily 1 and 2, ATP-binding (Domain) PS51192   HELICASE_ATP_BIND_1
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	719 amino acids
molecular mass	77,577.52 Da
pI	5.95
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 11 (79aa) 7.2 (52aa) 7.1 (51aa) 4.2 (30aa) 1.8 (13aa) 0 (0aa) 5.8 (42aa) 1.5 (11aa) 11.3 (81aa) 4.3 (31aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.4 (46aa) 0 (0aa) 2.6 (19aa) 3.9 (28aa) 3.2 (23aa) 3.6 (26aa) 1.4 (10aa) 9.9 (71aa) 7.6 (55aa) 7.1 (51aa)

>KRH_05600 ATP-dependent DEAD-box RNA helicase DeaD
GTGCCCACTGACAACATCCCCGAGAACGAGACCGCCCACACCGTGGCTCCCGCGAGCGAG
CCGGGCGAGACGACGGTCGTCGACGCCGGCGCCGCCGAGCAGGCCCCCAACGACGCCGCC
GGGCAGGTTCCCGCCGAGGCCCCCGCCGCCGACGCGGCGTCGTCCACCGCCGGGCCCGCG
CAGGCGTCCGCCGAGAAGCCCGCGGCCTCCTCCGAGGCCACCACGCCCACGTTCGCCGAG
CTCGGCGTGGACGGCCGCGTGCTGGCCGCCCTGGACGAGGTGGGCTACGAGTACCCCTCG
CCCATCCAGGCCGCCACCATCCCCGCGCTGCTCAGCGGCCGGGACGTCGTGGGCCTGGCC
CAGACCGGCACCGGCAAGACCGCCGCGTTCGCGGTGCCCGCGCTGTCCAAGCTCGCGGAG
CTCTCGGACCTGCACGGCCCGCAGCGCAGCACCCGCGTGCTCGTGCTGGCCCCCACCCGT
GAGCTCGCGCTGCAGGTGGCCGAGGCGTTCGGCTCCTACGCCACGCACCTGGAGGACTTC
ACCGTGCTGCCCGTGTACGGCGGCTCCTCCTACGGTCCGCAGCTGGCCGGGCTCAAGCGC
GGCGCGCAGGTGGTCGTGGGCACGCCCGGCCGTGTGATCGACCACCTCTCCAAGGGCTCG
CTCAAGCTCGACGACATCGCGTACGTGGTGCTGGACGAGGCCGACGAGATGCTGCGCATG
GGCTTCTCGGAGGACGTGGAGAAGATCCTCGCCCAGACCCCCGTGGAGAAGCAGGTGGCC
CTGTTCTCCGCGACCATGCCCAAGGCCATCCGGCGGATCGCGCAGCAGTACCTGCGGGAT
CCCCAGGAGATCACGGTCAAGGCCAAGACCACCACGGGCACCAACACCCGCCAGCGCTAC
ATGCAGGTCATGGGCCCCCACAAGCTGGACGCCATGACCCGCGTGCTCGAGGTCGAGGAC
TACGACGGCGTGATCGTCTTCGTGCGCACCAAGGCCGCCACCGAGGAGATCGCGGACAAG
CTCAAGGCCCGCGGCTACACCGCCGCCGCGATCAACGGCGATATCCCGCAGAACCTGCGC
GAGCGCACCGTGGACTCCCTGCGCGAGGGCAAGATCGACATCCTCGTGGCCACGGACGTG
GCCGCGCGCGGGCTGGACGTGGAGCGGATCTCCCTGGTGGTCAACTACGACATCCCCCAC
GACACCGAGTCCTACGTGCACCGCATCGGGCGCACCGGCCGCGCCGGGCGCAAGGGCGAG
GCCATCCTGTTCATGACGCCGCGCGAGAAGTACCTGCTGCGCGCCATCGAGAAGGCCACC
CGTCAGCCCGTGGAGCAGATGCGCGTGCCTACCACGGACGAGGTCAACCAGACCCGCAAG
GACAACTTCGCGCAGCAGATCGAGGAGACCATCGAGTCCGAGGACCTCGGGCTGTTCCGC
GAGCTGGTGGAGCGCTACGAGTCCGAGCACGACGTGGACGCCGTCGAGATCGCCGCGGCC
CTGGCCGTGATCGCGCAGAACGGCCGCCCGTTCCTCGTGGAGGACCTCCCCGAGATGCCC
CAGCGCAAGCGGGACCGTGAGCGCCGCGACGGGGACGGACCCCGCAACCGCCGCTCCCCG
GGCGACGAGGCCGGCATGAAGACCTACAAGCTGGCCGTGGGCCACCGGGACCGCGTGGTG
CCCGGTGCCGTGGTGGGTGCGCTCACGCACGAGGGCGGGCTCAACGGCTCGCAGATCGGC
GCGATCGACATCCGCCCCACGTTCACCCTGGTGGGCCTGCCCGAGAACCTGCCCGCGGGC
ACCCTCGACAAGCTCTCCAACACCCAGATCAACGGCGCCCCCATCCGCATCCAGGAGGAC
CGCGGACCCGGTGGTGCCCGCAGTGGCGGCGGCAACCGCTTCCGCGGCGGGGACCGTGAC
CGCGGCCCCCGCAACGACCGTGGGGACCGCGGCGGGTACCGCGGTGACCGTGGCGGCTAT
CGGGACGACCGCGGCGGCTACCGGGACGATCGCGGTGACCGTGGCGGGTACCGCGAGGAC
CGCGGTGGCTACCGTGACGACCGTGGTGGCGGGCGCCCCCGCGGCGGCGGGTCCTCCTAC
CAGGACCGTCCCCGCAAGAAGAGCTACGGCCGGAACAACGGCGGCTACTCGGGCCGCTGA


>KRH_05600 ATP-dependent DEAD-box RNA helicase DeaD
MPTDNIPENETAHTVAPASEPGETTVVDAGAAEQAPNDAAGQVPAEAPAADAASSTAGPA
QASAEKPAASSEATTPTFAELGVDGRVLAALDEVGYEYPSPIQAATIPALLSGRDVVGLA
QTGTGKTAAFAVPALSKLAELSDLHGPQRSTRVLVLAPTRELALQVAEAFGSYATHLEDF
TVLPVYGGSSYGPQLAGLKRGAQVVVGTPGRVIDHLSKGSLKLDDIAYVVLDEADEMLRM
GFSEDVEKILAQTPVEKQVALFSATMPKAIRRIAQQYLRDPQEITVKAKTTTGTNTRQRY
MQVMGPHKLDAMTRVLEVEDYDGVIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLR
ERTVDSLREGKIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRKGE
AILFMTPREKYLLRAIEKATRQPVEQMRVPTTDEVNQTRKDNFAQQIEETIESEDLGLFR
ELVERYESEHDVDAVEIAAALAVIAQNGRPFLVEDLPEMPQRKRDRERRDGDGPRNRRSP
GDEAGMKTYKLAVGHRDRVVPGAVVGALTHEGGLNGSQIGAIDIRPTFTLVGLPENLPAG
TLDKLSNTQINGAPIRIQEDRGPGGARSGGGNRFRGGDRDRGPRNDRGDRGGYRGDRGGY
RDDRGGYRDDRGDRGGYREDRGGYRDDRGGGRPRGGGSSYQDRPRKKSYGRNNGGYSGR

NBRC No.	clone name	start	stop	length(bp)
G09-002-017	MDFO1S8503H18	590,323	628,877	38,555

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.