DOGAN: CDS Information : KRH

Display	Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

Overview
Genome
Clone

Center position		change
ID		change
Gene name		change

Metabolism

Carbohydrate Metabolism

Glycolysis / Gluconeogenesis

Pyruvate metabolism

Glyoxylate and dicarboxylate metabolism

Propanoate metabolism

Butanoate metabolism

Inositol metabolism

Inositol phosphate metabolism

Citrate cycle (TCA cycle)

Pentose phosphate pathway

Fructose and mannose metabolism

Galactose metabolism

Ascorbate and aldarate metabolism

Starch and sucrose metabolism

Aminosugars metabolism

Nucleotide sugars metabolism

Energy Metabolism

electron transport system

ATP synthesis

Sulfur metabolism

ferredoxin, thioredoxin, rubredoxin

Lipid Metabolism

Fatty acid biosynthesis (path 1)

Fatty acid biosynthesis (path 2)

Fatty acid metabolism

Synthesis and degradation of ketone bodies

Sterols biosynthesis

Glycerolipid metabolism

Phospholipid degradation

Nucleotide Metabolism

Purine metabolism

Pyrimidine metabolism

Amino Acid Metabolism

Glutamate metabolism & Nitrogen assimilation

Arginine and proline metabolism

Histidine metabolism

Tyrosine metabolism

Phenylalanine metabolism

Tryptophan metabolism

Phenylalanine, tyrosine and tryptophan biosynthesis

Urea cycle and metabolism of amino groups

Alanine and aspartate metabolism

Glycine, serine and threonine metabolism

Methionine metabolism

Cysteine metabolism

Valine, leucine and isoleucine degradation

Valine, leucine and isoleucine biosynthesis

Lysine biosynthesis

Lysine degradation

Metabolism of Cofactors and Vitamins

Thiamine metabolism

Riboflavin metabolism

Vitamin B6 metabolism

Nicotinate and nicotinamide metabolism

Pantothenate and CoA biosynthesis

Biotin metabolism

Folate biosynthesis

Porphyrin and chlorophyll metabolism

Ubiquinone biosynthesis

Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics

Degradation of aromatic compounds

Degradation of others

Others

Genetic Information Processing

Transcription

RNA polymerase

HTH family transcriptional regulators

sigma factor

Translation

Ribosome

Translation factors

Aminoacyl-tRNA biosynthesis

Replication and Repair

DNA polymerase

Replication complex

Others

Environmental Information and Cellular Processing

Membrane Transport

ABC transporter

transporters

Protein export

Phosphotransferase system (PTS)

Signal Transduction

Two-component system

Cellular Processes

Peptidoglycan biosynthesis

Cell wall/membrane/envelope biogenesis

Cell division

Cell Motility

Others

Unclassified

putative function (general)

uncharacterized protein

Transposon-related functions

hypothetical protein

hypothetical protein (prediction only)

Genome	Display	Sync
chromosome

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	747,479 / 746,808 / -
Location	complement(746808..747479)
Type	CDS
Length	672 bp (223 aa)

Product	hypothetical protein
Gene name
Functional category	Unclassified - hypothetical protein
EC number
Note
KEGG pathway
Sequence feature
References

UniProt	B2GJK3
INSD	BAG29032.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733E58

BLASTP
Database:UniProtKB:12.5

show BLAST table

1	E=1e-26	A0JYX6_ARTS2	Putative uncharacterized protein precursor	Alignment
2	E=2e-24	A1R8K2_ARTAT	Putative Flp pilus assembly protein CpaB family	Alignment
3	E=1e-17	A6WEB9_KINRA	SAF domain protein precursor	Alignment
4	E=8e-16	Q5YPT3_NOCFA	Putative uncharacterized protein	Alignment
5	E=5e-15	A1SES6_NOCSJ	SAF domain precursor	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:16.0

IPR013974 SAF domain (Domain)
	PF08666 SAF

SignalP

Bacteria, Gram-positive

TMHMM

Transmembrane 1

SOSUI

Transmembrane 1

size of protein

223 amino acids

molecular mass

22,299.34 Da

pI

10.78

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
18.8 (42aa)	11.7 (26aa)	11.7 (26aa)	0 (0aa)	0.4 (1aa)	0.4 (1aa)	7.6 (17aa)	0.4 (1aa)	9.4 (21aa)	8.5 (19aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
9.4 (21aa)	0.4 (1aa)	0 (0aa)	2.2 (5aa)	0.9 (2aa)	0 (0aa)	2.7 (6aa)	8.5 (19aa)	3.6 (8aa)	3.1 (7aa)

>KRH_06850 hypothetical protein
ATGAGCTCATCGTCTCGCCCGCACTATCCGCTCGGACTGCGCCTGCGCACGGCGGTGCGG
CGCCGCCACCGTCTCGTGGCCGCCGCGCTGTGCGCACTGGCCCTGACACTCGTGGTCCTC
CGGCTGGCCCCTCCCGGGGCCCGGACCGCTCCCGTGGTGACGGCCGCGCACGAGGTCCCC
GCAGGCACTTCCCTGGGCGCGGGCGACCTGGCGGTCTCGCAGTTCCCCGAGGCGCTGGCC
CCCACCGGTGCGTACGCCTCCCCCGCCGAGGCACAGGGTCAGACCAGCGCCGTGGCGCTC
ACCCCGGGGCAGCCCGTGACGTCCTCCACCGTGCTGGGCCCCGGCGTACTCACCGGCCAG
CCGACGGGCACCACGGCCGCCACCGTGCGCGTGAGTGATCCGGCAGTGCTGCGGCACGTG
CGCCCGGGGGACGCCGTGGACGTGGTGCACCACACGGACGAGGCCCGCAGCGCCCGGGGG
CGCACCGCGGCACGGGCGGTCACCGTGCTGTGGGCGGCCGGGGCACCGTCCGGCACCGGC
AGCTCGCTGCTCGCGGCAGGCACCGACGACGACGCCGGCCTCGTGGTCCTGGCCGCGCCC
CGTGAGACGGCCGCGGAGCTGGCGTCCCTGGAGGGCAGTGGACGCGTGTCGCTCGTGCTG
GTGTCCCGGTGA


>KRH_06850 hypothetical protein
MSSSSRPHYPLGLRLRTAVRRRHRLVAAALCALALTLVVLRLAPPGARTAPVVTAAHEVP
AGTSLGAGDLAVSQFPEALAPTGAYASPAEAQGQTSAVALTPGQPVTSSTVLGPGVLTGQ
PTGTTAATVRVSDPAVLRHVRPGDAVDVVHHTDEARSARGRTAARAVTVLWAAGAPSGTG
SSLLAAGTDDDAGLVVLAAPRETAAELASLEGSGRVSLVLVSR

NBRC No.	clone name	start	stop	length(bp)
G09-002-019	MDFO1S8503P10	732,754	760,396	27,643

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.

CDS Information : KRH_06850

Genomic map

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

Location

Annotation

Related links to external database

Computational search results

Calculated information (Amino acid sequence)

Sequence

Covered clones

Distribution of Our Microbial Genomic DNA clones