CDS Information : KRH_08760

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	957,274 / 958,506 / +
Location	957274..958506
Type	CDS
Length	1,233 bp (410 aa)

Product	cysteine desulfurase
Gene name	iscS
Functional category	Metabolism - Others
EC number	2.8.1.7
Note
KEGG pathway	KO:K04487
Sequence feature
References	Uniprot:P05341 Pubmed:8161529,8464885 Uniprot:P0A6B7 Pubmed:12876288,10908675,10739946 Uniprot:O53272 Pubmed:17609386

UniProt	B2GL47
INSD	BAG29223.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733E5E

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=1e-121 A0JYI8_ARTS2 Aminotransferase, class V Alignment 2 E=1e-118 A1R865_ARTAT Putative aminotransferase, class V protein Alignment 3 E=1e-113 A4X483_9ACTO Aminotransferase, class V Alignment 4 E=1e-112 A1GBE4_9ACTO Aminotransferase, class V Alignment 5 E=1e-110 A0LSQ1_ACIC1 Aminotransferase, class V Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000192 Aminotransferase, class V/Cysteine desulfurase (Domain) PF00266   Aminotran_5 IPR000192 Aminotransferase, class V (Family) PF00266   Aminotran_5 IPR000192 Aminotransferase, class V/Cysteine desulfurase (Region) PF00266   Aminotran_5 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (Domain) G3DSA:3.40.640.10   no description IPR015424 Pyridoxal phosphate-dependent transferase, major region (Domain) SSF53383   PLP-dependent transferases
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	410 amino acids
molecular mass	42,547.79 Da
pI	5.14
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 19 (78aa) 9.8 (40aa) 8.8 (36aa) 1.5 (6aa) 3.2 (13aa) 1 (4aa) 5.1 (21aa) 2.2 (9aa) 9.5 (39aa) 5.6 (23aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.1 (21aa) 1 (4aa) 1.7 (7aa) 1.7 (7aa) 0.7 (3aa) 0.2 (1aa) 3.9 (16aa) 7.6 (31aa) 5.4 (22aa) 7.1 (29aa)

>KRH_08760 cysteine desulfurase
ATGCCCACACCCCGCATCTACATGGACCACGCCGCCACCACGGACATGCTCCCGGAGGCC
GTCGACGCTTACCTGGAGCAGGCCAGGCGGGGCGGCAACCCCGCGTCCCTGCACTCCGGC
GGGCGGTCCGCGCGCATGGCGCTGGAGACGGGGCGGGACGCCGTGGCCGGTGCCCTGAAC
GCGGAACCGGTGGAGATCATCCTCACCTCCGGGGGCACCGAGGCGGACAACATGGCGGTG
CTCGGCCTGTTCCGTGCCGCCCACGAGGCGGACCCGCGCCGCACGGTGATCGCGCTGTCC
GCCGTGGAGCACCACGCCGTGTCCGAGGCCGCCGAGTGGCTCGCGGCGCACGAGGGCGCG
GAGCTCGTGTGGCTGGACGTCGACGCCGCGGGGCGTGTGGATCCCCACCAGCTCGAACGG
CTCCTGGCCGAGCGCGCGGCGGAGGTCGCCCTGGTCACCGTGATGTGGGCCAACAACGAG
GTGGGGACCGTGCAGCCGGTGGCCGAGCTGGCCGCCCTGTGCGACGCCGCCGGGGTGTCC
TTCCACGTGGACGCGGTCCAGGCGTTCTGCGCCGTGCCCGTGGACGCCCACCTGCCCGGG
ATCAGCACGCTGGCGGTCTCCGCGCACAAGCTCGGCGGACCCATGGGTGTGGGTGCCCTC
TACGCGCCGCGCACCGTGCGTCTCGCCGCCACGAGTTTCGGCGGCGGCCAGGAGCGCAGC
GTCCGCTCGGGCACCGTCAACGCCGCGGGCGCCGCGGCCTTCGGCGCCGCCGTGGAGGCG
GCGCAGCGAGCATTCCGGGACGAGTTCCTGCGCCGCGCCGCGCTGCGCGACGCACTCGTG
GCGGGCATCCGGGACCGTGTCCCCGAGGCGGTGCTGCGCGGACCCGAGCCCGGCAGTCCC
ACCGAGGAGTGGGAGCACCCCACGCGTCTGCCCGGCAACGCGCACTTCACCTTCCCCGGG
TGCGAGGGCGACTCCATGCTCTTCCTATTCGACGCCGCCGGGGTGGCCCTGTCCACGGGC
TCGGCGTGCAGCGCGGGCGTGCCCCGTGCCTCCCACGTGCTGCTCGCCATGGGCGTGGAC
GAGGAGACCGCTCGCGGCGCCCAGCGCTTCTCCCTGGGCCACTCCAGCACGCGGGAGGAC
GTCGACACCGTGCTCGACGCCGTGGTGGACGTCCACGCCCGGGCCCGAGCGGCGGGCCTG
TCGGGTCACGTCCCGGGGGCCTTCACCTCGTGA


>KRH_08760 cysteine desulfurase
MPTPRIYMDHAATTDMLPEAVDAYLEQARRGGNPASLHSGGRSARMALETGRDAVAGALN
AEPVEIILTSGGTEADNMAVLGLFRAAHEADPRRTVIALSAVEHHAVSEAAEWLAAHEGA
ELVWLDVDAAGRVDPHQLERLLAERAAEVALVTVMWANNEVGTVQPVAELAALCDAAGVS
FHVDAVQAFCAVPVDAHLPGISTLAVSAHKLGGPMGVGALYAPRTVRLAATSFGGGQERS
VRSGTVNAAGAAAFGAAVEAAQRAFRDEFLRRAALRDALVAGIRDRVPEAVLRGPEPGSP
TEEWEHPTRLPGNAHFTFPGCEGDSMLFLFDAAGVALSTGSACSAGVPRASHVLLAMGVD
EETARGAQRFSLGHSSTREDVDTVLDAVVDVHARARAAGLSGHVPGAFTS

NBRC No.	clone name	start	stop	length(bp)
G09-001-041	MDFO1S8503B05	922,221	959,165	36,945
G09-002-025	MDFO1S8502H24	952,899	988,583	35,685

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.