DOGAN: CDS Information : KRH

Display	Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

Overview
Genome
Clone

Center position		change
ID		change
Gene name		change

Metabolism

Carbohydrate Metabolism

Glycolysis / Gluconeogenesis

Pyruvate metabolism

Glyoxylate and dicarboxylate metabolism

Propanoate metabolism

Butanoate metabolism

Inositol metabolism

Inositol phosphate metabolism

Citrate cycle (TCA cycle)

Pentose phosphate pathway

Fructose and mannose metabolism

Galactose metabolism

Ascorbate and aldarate metabolism

Starch and sucrose metabolism

Aminosugars metabolism

Nucleotide sugars metabolism

Energy Metabolism

electron transport system

ATP synthesis

Sulfur metabolism

ferredoxin, thioredoxin, rubredoxin

Lipid Metabolism

Fatty acid biosynthesis (path 1)

Fatty acid biosynthesis (path 2)

Fatty acid metabolism

Synthesis and degradation of ketone bodies

Sterols biosynthesis

Glycerolipid metabolism

Phospholipid degradation

Nucleotide Metabolism

Purine metabolism

Pyrimidine metabolism

Amino Acid Metabolism

Glutamate metabolism & Nitrogen assimilation

Arginine and proline metabolism

Histidine metabolism

Tyrosine metabolism

Phenylalanine metabolism

Tryptophan metabolism

Phenylalanine, tyrosine and tryptophan biosynthesis

Urea cycle and metabolism of amino groups

Alanine and aspartate metabolism

Glycine, serine and threonine metabolism

Methionine metabolism

Cysteine metabolism

Valine, leucine and isoleucine degradation

Valine, leucine and isoleucine biosynthesis

Lysine biosynthesis

Lysine degradation

Metabolism of Cofactors and Vitamins

Thiamine metabolism

Riboflavin metabolism

Vitamin B6 metabolism

Nicotinate and nicotinamide metabolism

Pantothenate and CoA biosynthesis

Biotin metabolism

Folate biosynthesis

Porphyrin and chlorophyll metabolism

Ubiquinone biosynthesis

Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics

Degradation of aromatic compounds

Degradation of others

Others

Genetic Information Processing

Transcription

RNA polymerase

HTH family transcriptional regulators

sigma factor

Translation

Ribosome

Translation factors

Aminoacyl-tRNA biosynthesis

Replication and Repair

DNA polymerase

Replication complex

Others

Environmental Information and Cellular Processing

Membrane Transport

ABC transporter

transporters

Protein export

Phosphotransferase system (PTS)

Signal Transduction

Two-component system

Cellular Processes

Peptidoglycan biosynthesis

Cell wall/membrane/envelope biogenesis

Cell division

Cell Motility

Others

Unclassified

putative function (general)

uncharacterized protein

Transposon-related functions

hypothetical protein

hypothetical protein (prediction only)

Genome	Display	Sync
chromosome

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,065,816 / 1,066,607 / +
Location	1065816..1066607
Type	CDS
Length	792 bp (263 aa)

Product	ATP synthase subunit a
Gene name	atpB
Functional category	Metabolism - Energy Metabolism
EC number	3.6.3.14
Note
KEGG pathway	map:00190 KO:K02108
Sequence feature
References	Uniprot:Q2RFX3 Pubmed:9045833

UniProt	B2GLY4
INSD	BAG29325.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733FB7

BLASTP
Database:UniProtKB:12.5

show BLAST table

1	E=1e-67	A0JY70_ARTS2	ATP synthase A chain	Alignment
2	E=4e-67	A1R7V8_ARTAT	ATP synthase A chain	Alignment
3	E=3e-53	A1SHI5_NOCSJ	ATP synthase A chain	Alignment
4	E=2e-50	A4FN33_SACEN	ATP synthase A chain	Alignment
5	E=2e-45	A4FKF9_SACEN	ATP synthase A chain	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:16.0

IPR000568 ATPase, F0 complex, subunit A (Family)
	PTHR11410 ATP SYNTHASE SUBUNIT 6
	TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit
	PR00123 ATPASEA
	SSF81336 F1F0 ATP synthase subunit A
	PF00119 ATP-synt_A

SignalP

No significant hit

TMHMM

Transmembrane 6

SOSUI

Transmembrane 6

size of protein

263 amino acids

molecular mass

29,064.93 Da

pI

9.77

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
8.4 (22aa)	10.3 (27aa)	12.9 (34aa)	8.4 (22aa)	10.6 (28aa)	0.4 (1aa)	6.1 (16aa)	4.6 (12aa)	9.5 (25aa)	3.4 (9aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
3.8 (10aa)	0 (0aa)	2.3 (6aa)	3 (8aa)	3 (8aa)	2.3 (6aa)	2.7 (7aa)	3.8 (10aa)	1.1 (3aa)	3.4 (9aa)

>KRH_09780 ATP synthase subunit a
TTGAACCCCGCCCTGAGGATTCCGGCCGAATTCGTGGCCCCGTCCACGGAAGACATGCAT
CTTCCCCCGTTCTTCGAGGTCGGTTCGTTCGCCTTCGGCAAGCAGACCCTGCTGATCCTC
CTCTCGGTGGTGCTGATCGCTGGCTTCTTCATGTTCGTGATCCGGCGCCGAGCCATGGTC
CCTTCCAAGGGTCAATACCTGGGTGAGATGGGCTACGGGTTCGTGCGCAACCACCTGGGC
CGCGACATCATCGGCGAGAAGGACTTCCGCCCGTTCGTGCCCCTGCTGTTCACCTTTTTC
TTCTTCCTGCTGGTGAACAACCTCTTCGGGTCCATCCCCGTGCTGCAGCTTCCCACCTTC
TCCCACCCGGGCTCCGCGTACATCCTCGCGGCCATCGCCTACGTGATTTGGGTGGGCGTG
GGCATCAAGCGCCACGGCCTCGGGCAGTTCATGGTCAAGATGACCATGCCCCCGAACGTC
CCCAAGATCCTCTACGTGATCCTGATCCCGCTCGAGTTCCTCTCGAACCTCATCATCCGC
CCCGTGACCCACGCCCTGCGTGTGTTCGCCACCATGTTCGCCGGTCACATGGCCATCATG
GTCGCGGCGGCCCTGACCGCGTTCCTCGCCACCGAGGTGGGCGGCGTGATGGGCATCGGC
GGTTCCGTGTTCGGCATCGTGCTGGGACTGTTCATCTACTTCCTCGAGGTCCTCATCCAG
GTCCTCCAGGCCTACATCTTCACCCTGCTGTTCGCCGTGTACGTACAGGGCGCACTGCAG
GAGGGGCACTAG


>KRH_09780 ATP synthase subunit a
MNPALRIPAEFVAPSTEDMHLPPFFEVGSFAFGKQTLLILLSVVLIAGFFMFVIRRRAMV
PSKGQYLGEMGYGFVRNHLGRDIIGEKDFRPFVPLLFTFFFFLLVNNLFGSIPVLQLPTF
SHPGSAYILAAIAYVIWVGVGIKRHGLGQFMVKMTMPPNVPKILYVILIPLEFLSNLIIR
PVTHALRVFATMFAGHMAIMVAAALTAFLATEVGGVMGIGGSVFGIVLGLFIYFLEVLIQ
VLQAYIFTLLFAVYVQGALQEGH

NBRC No.	clone name	start	stop	length(bp)
G09-001-047	MDFO1S8503L22	1,058,228	1,098,914	40,687
G09-002-027	MDFO1S8501I13	1,022,894	1,068,201	45,308

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.

CDS Information : KRH_09780

Genomic map

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

Location

Annotation

Related links to external database

Computational search results

Calculated information (Amino acid sequence)

Sequence

Covered clones

Distribution of Our Microbial Genomic DNA clones