CDS Information : KRH_10000

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,086,996 / 1,087,889 / +
Location	1086996..1087889
Type	CDS
Length	894 bp (297 aa)

Product	glutamate racemase
Gene name	murI
Functional category	Metabolism - Amino Acid Metabolism
EC number	5.1.1.3
Note
KEGG pathway	map:00251 KO:K01776
Sequence feature
References	HAMAP:MF_00258

UniProt	B2GM06
INSD	BAG29347.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733EAD

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=1e-119 A0JY42_ARTS2 Glutamate racemase Alignment 2 E=1e-119 A1R7T1_ARTAT Glutamate racemase Alignment 3 E=7e-95 Q0RQL3_FRAAA Glutamate racemase Alignment 4 E=1e-93 Q3W7C3_9ACTO Glutamate racemase Alignment 5 E=5e-93 A4AK01_9ACTN Glutamate racemase Alignment
HAMAP Database:HAMAP:20070519	MF_00258   MURI
InterPro Database:interpro:16.0	IPR001920 Asp/Glu racemase (Family) PF01177   Asp_Glu_race PS00924   ASP_GLU_RACEMASE_2 G3DSA:3.40.50.1860   no description SSF53681   Aspartate/glutamate racemase PS00923   ASP_GLU_RACEMASE_1 IPR004391 Glutamate racemase (Family) PTHR21198   GLUTAMATE RACEMASE TIGR00067   glut_race: glutamate racemase IPR018187 Asp/Glu racemase, active site (Active_site) PS00923   ASP_GLU_RACEMASE_1 PS00924   ASP_GLU_RACEMASE_2
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	297 amino acids
molecular mass	31,854.94 Da
pI	4.79
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 10.4 (31aa) 10.1 (30aa) 9.4 (28aa) 4.7 (14aa) 2 (6aa) 0 (0aa) 7.4 (22aa) 1 (3aa) 7.4 (22aa) 7.7 (23aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 7.1 (21aa) 1 (3aa) 3 (9aa) 3.7 (11aa) 3.7 (11aa) 0.7 (2aa) 1.7 (5aa) 7.4 (22aa) 4.7 (14aa) 6.7 (20aa)

>KRH_10000 glutamate racemase
ATGCAGGCTGAGCCCGAACGTCGCCCCGGACCGAATCCCAACTCGCCCATCGGCGTGTTC
GACTCGGGTGTGGGCGGGCTCACGGTGGCCCGGTCCATCATCGACCAGCTGCCCAACGAG
GAGATCCTCTACGTGGGGGACACCGCGAACGGACCCTACGGCCCCCTGCCCATCGCGCAG
GTGCGCTCGAACGCGCTGCGGATCATGGACGACCTCGTGGACTCCGGCGTCAAGCTGCTG
GTGATCGCGTGCAACACGGCCTCGGCGGCGGTGCTTCGGGACGCCCGTGAGCGCTACACG
CGCGGGTACAGCATCCCCGTGACCGAGGTGATCCAGCCCGCTGTGCGACGCGCCGTGGCC
ACCACGCGCTCCGGACGCGTGGGGGTGATCGGCACCGAGGCCACCATCGGCTCCCGGGCC
TACAACGACACCTTCGCGGCGGCCCCGCAGCTGGAGATCACGTCCGTGGCGTGCCCCGCC
TTCGTGGAGTACGTGGAACGGGGTGTGACCTCCGGGCCCGAGCTGCTGAGCACCGCCCAG
GAGTATCTGCAGCCCCTCAAGGACGCCCAGGTGGACACCCTGGTGCTCGGCTGCACCCAC
TACCCGCTGCTCACGGCCGTGATCTCCTACGTGATGGGCGAGAGCGTGAACCTGGTCTCC
TCCGCCGAGGAGACCGCCCGCGACGTCTACCGCAGCCTGCTGGACAACGGCCTCGAGCGG
GACCCGTCCCTGGCGCCCCACCACGAGTTCCTCGCCACGGGGGACCCGGCGAGCTTCGAG
GTCCTGGCCCAGCGCTTCCTGGGACCGGAGGTGCTGCGCGTGCGCCACACCTCCTCCGTG
GCCGAGCAGTACCCCACGGGCTCCCTCTCGACGATCCACCCGGCTCAGCGCTGA


>KRH_10000 glutamate racemase
MQAEPERRPGPNPNSPIGVFDSGVGGLTVARSIIDQLPNEEILYVGDTANGPYGPLPIAQ
VRSNALRIMDDLVDSGVKLLVIACNTASAAVLRDARERYTRGYSIPVTEVIQPAVRRAVA
TTRSGRVGVIGTEATIGSRAYNDTFAAAPQLEITSVACPAFVEYVERGVTSGPELLSTAQ
EYLQPLKDAQVDTLVLGCTHYPLLTAVISYVMGESVNLVSSAEETARDVYRSLLDNGLER
DPSLAPHHEFLATGDPASFEVLAQRFLGPEVLRVRHTSSVAEQYPTGSLSTIHPAQR

NBRC No.	clone name	start	stop	length(bp)
G09-001-047	MDFO1S8503L22	1,058,228	1,098,914	40,687

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.