CDS Information : KRH_10310

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Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,127,138 / 1,126,326 / -
Location	complement(1126326..1127138)
Type	CDS
Length	813 bp (270 aa)

Product	putative IclR family transcriptional regulator
Gene name
Functional category	Genetic Information Processing - Transcription
EC number
Note	Belongs to the IclR transcriptional regulator family, which includes the acetate operon repressor IclR of Escherichia coli (P16528), the glycerol operon regulatory protein GylR of Streptomyces griseus (P22866) and the HTH-type transcriptional regulator KipR of Bacillus subtilis (P42968).
KEGG pathway
Sequence feature
References	Family/Domain:iclR_CTD Family/Domain:iclR_DBD

UniProt	B2GFK5
INSD	BAG29378.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733F3F

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=1e-104 A1R7K1_ARTAT Putative transcriptional regulator, IclR family Alignment 2 E=1e-103 A0JXX9_ARTS2 Transcriptional regulator, IclR family Alignment 3 E=2e-91 A1SLW6_NOCSJ Regulatory proteins, IclR Alignment 4 E=9e-91 A3TR87_9MICO Putative IclR-family transcriptional regulator Alignment 5 E=4e-90 Q82JR7_STRAW Putative IclR-family transcriptional regulator Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR005471 Transcriptional regulator IclR, N-terminal (Domain) SM00346   no description PF09339   HTH_IclR PS51077   HTH_ICLR IPR005471 Bacterial regulatory proteins, IclR (Family) PF01614   IclR SM00346   no description PS51077   HTH_ICLR PS51078   ICLR_ED IPR014757 Transcriptional regulator IclR, C-terminal (Domain) PF01614   IclR PS51078   ICLR_ED
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	270 amino acids
molecular mass	28,030.75 Da
pI	10.81
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 14.8 (40aa) 9.3 (25aa) 9.6 (26aa) 4.4 (12aa) 1.5 (4aa) 1.1 (3aa) 4.4 (12aa) 0.7 (2aa) 10.4 (28aa) 10.7 (29aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.4 (12aa) 0.4 (1aa) 0 (0aa) 4.4 (12aa) 0 (0aa) 1.9 (5aa) 3.3 (9aa) 9.3 (25aa) 4.4 (12aa) 4.8 (13aa)

>KRH_10310 putative IclR family transcriptional regulator
ATGGACACGACGCATGCGATCGACCCGACCGGTGCCCCCCTGGGCTCGCCCCTGGGCGGC
CACGGCACCGGCTCACGGCTCAGCGAGAAGTCCTCGCACTCCTCCTCCGGGGTGGGGGTG
ATCGACAAGGCCTCCCTGATCCTGGACGCCCTCGAGGCCGGTCCGGCCTCCCTCGCGGAC
CTCGTGGACGCCACGGGCCTGTCCCGGCCCACCGCGCACCGCCTCGCCGTGGCGCTGGCC
CACCACCGTTTCGTGGGCCGGGACGTGCAGGGCCGCTTCGTGCTGGGCTCCCGCCTGGTG
GAGCTCGCCTCCGCCGCGGGCGAGGACCGCCTGATCTCGGCCGCCGCGCCCGTGCTGCTG
CAGCTGCGGGACAGCACGGGCGAGTCCTCCCAGGTGTTCCGGCGGCAGGGCGAGTGGCGC
GTGTGCGTGGCCTCGGCCGAGCGCCCCATCGGGCTGCGGGACACCATCCCCGTGGGCACG
CAGCTGTCCATGAAGGCAGGCTCGGCGGCGCAGGTGCTCGTGGCGTGGGAGGACCACGCG
CGGCTGATCGAGGGACTGCAGCACGCCCGGTTCTCGGCCACCACGCTCGCCGGGGTCCGG
CGCCGGGGCTGGGCCCAGTCGATCGGCGAGCGCGAGGCTGGCATCGCCTCGGTCTCCGCC
CCGGTGCGGGGCCCGTCGGGGCGGGTGATCGCGGCGGTCTCGATCTCCGGGCCCATCGAG
CGGCTGTCCAAGCAGCCCGGCCAGAAGCACGCGGACGTGGTGGTCCAGGCCGCGCGCCAG
CTCACGGAGGCGGTGCGGGTCAGCGCCGCGTGA


>KRH_10310 putative IclR family transcriptional regulator
MDTTHAIDPTGAPLGSPLGGHGTGSRLSEKSSHSSSGVGVIDKASLILDALEAGPASLAD
LVDATGLSRPTAHRLAVALAHHRFVGRDVQGRFVLGSRLVELASAAGEDRLISAAAPVLL
QLRDSTGESSQVFRRQGEWRVCVASAERPIGLRDTIPVGTQLSMKAGSAAQVLVAWEDHA
RLIEGLQHARFSATTLAGVRRRGWAQSIGEREAGIASVSAPVRGPSGRVIAAVSISGPIE
RLSKQPGQKHADVVVQAARQLTEAVRVSAA

NBRC No.	clone name	start	stop	length(bp)
G09-002-028	MDFO1S8502F18	1,110,843	1,154,649	43,807

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.