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CDS Information : KRH_10370

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close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 1,132,852 / 1,134,003 / +
Location 1132852..1134003
Type CDS
Length 1,152 bp (383 aa)

close this sectionAnnotation

Product D-alanine--D-alanine ligase
Synonym: D-alanylalanine synthetase
Gene name ddl
Synonym: ddlA
Functional category Environmental Information and Cellular Processing
- Cellular Processes
EC number 6.3.2.4
Note
KEGG pathway map:00473 KO:K01921
Sequence feature
References HAMAP:MF_00047
Uniprot:P95114 Pubmed:12499203

close this sectionRelated links to external database

UniProtB2GFL1
INSDBAG29384.1 (DDBJ GenBank EMBL)
UniParcUPI0001733F45

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=1e-116A0JXX3_ARTS2D-alanine--D-alanine ligaseAlignment
2E=1e-111A1R7J5_ARTATD-alanine--D-alanine ligaseAlignment
3E=1e-107A3TR97_9MICOD-alanylalanine synthetaseAlignment
4E=1e-100A6W7R2_KINRAD-alanine--D-alanine ligaseAlignment
5E=3e-96A0LV98_ACIC1D-alanine--D-alanine ligaseAlignment
HAMAP
Database:HAMAP:20070519
 [17-376]  41.601 MF_00047
MF_00047   DDL
InterPro
Database:interpro:16.0
IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site (Conserved_site)
 [318-346]  PS00844
PS00844   DALA_DALA_LIGASE_2
 [126-137]  PS00843
PS00843   DALA_DALA_LIGASE_1
IPR000291 D-alanine--D-alanine ligase/VANA/B/C (Family)
 [126-137]  PS00843
PS00843   DALA_DALA_LIGASE_1
 [318-346]  PS00844
PS00844   DALA_DALA_LIGASE_2
IPR005905 D-alanine--D-alanine ligase (Family)
 [112-381]  4.3e-66 PTHR23132
PTHR23132   D-ALANINE--D-ALANINE LIGASE
 [18-376]  8.4e-131 TIGR01205
TIGR01205   D_ala_D_alaTIGR: D-alanine--D-alanine ligas
IPR011095 D-alanine--D-alanine ligase, C-terminal (Domain)
 [159-373]  3.2e-92 PF07478
PF07478   Dala_Dala_lig_C
IPR011127 D-alanine--D-alanine ligase, N-terminal (Domain)
 [19-158]  1.1e-41 PF01820
PF01820   Dala_Dala_lig_N
IPR011761 ATP-grasp fold (Domain)
 [164-373]  45.508 PS50975
PS50975   ATP_GRASP
IPR013816 ATP-grasp fold, subdomain 2 (Domain)
 [221-378]  5.9e-45 G3DSA:3.30.470.20
G3DSA:3.30.470.20   no description
IPR013817 Pre-ATP-grasp fold (Domain)
 [14-148]  1.6e-28 G3DSA:3.40.50.20
G3DSA:3.40.50.20   no description
IPR016185 PreATP-grasp-like fold (Domain)
 [16-158]  4.5e-36 SSF52440
SSF52440   PreATP-grasp domain
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 383 amino acids
molecular mass 41,364.79 Da
pI 4.63
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.7
(41aa)
8.1
(31aa)
9.9
(38aa)
5.2
(20aa)
3.7
(14aa)
1
(4aa)
5.5
(21aa)
2.1
(8aa)
9.1
(35aa)
6.3
(24aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.5
(21aa)
1.6
(6aa)
0.5
(2aa)
1.8
(7aa)
1.6
(6aa)
1.6
(6aa)
3.9
(15aa)
6.8
(26aa)
7.6
(29aa)
7.6
(29aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-002-028 MDFO1S8502F18 1,110,843 1,154,649 43,807
G09-002-029 MDFO1S8503I17 1,129,364 1,163,679 34,316

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.