CDS Information : KRH_10470

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,142,729 / 1,143,433 / +
Location	1142729..1143433
Type	CDS
Length	705 bp (234 aa)

Product	ribonuclease III Synonym: RNase III
Gene name	rnc
Functional category	Genetic Information Processing - Translation
EC number	3.1.26.3
Note
KEGG pathway	KO:K03685
Sequence feature
References	HAMAP:MF_00104

UniProt	B2GFM1
INSD	BAG29394.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733F7E

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=4e-62 A6W7S5_KINRA Ribonuclease III Alignment 2 E=2e-60 A1R7I4_ARTAT Putative ribonuclease III RNase III Alignment 3 E=1e-58 A0JXW0_ARTS2 Ribonuclease III Alignment 4 E=2e-57 RNC_NOCFA Ribonuclease 3 Ribonuclease III RNase III Alignment 5 E=4e-57 A4KKI5_MYCTU Ribonuclease III rnc RNase III Alignment
HAMAP Database:HAMAP:20070519	MF_00104   RNC
InterPro Database:interpro:16.0	IPR000999 Ribonuclease III (Domain) PS50142   RNASE_3_2 PS00517   RNASE_3_1 SSF69065   RNase III catalytic domain-like (Pfam 00636) G3DSA:1.10.1520.10   no description PF00636   Ribonuclease_3 SM00535   no description IPR001159 Double-stranded RNA binding (Domain) SM00358   no description PS50137   DS_RBD PF00035   dsrm IPR001220 Legume lectin, beta domain (Domain) PS00307   LECTIN_LEGUME_BETA IPR011907 Ribonuclease III, bacterial (Family) PTHR11207   RIBONUCLEASE III TIGR02191   RNaseIII: ribonuclease III IPR014720 Double-stranded RNA-binding-like (Domain) G3DSA:3.30.160.20   no description IPR019825 Legume lectin, beta chain, Mn/Ca-binding site (Binding_site) PS00307   LECTIN_LEGUME_BETA
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	234 amino acids
molecular mass	25,325.60 Da
pI	5.91
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 12.8 (30aa) 9 (21aa) 12 (28aa) 2.6 (6aa) 1.3 (3aa) 0.9 (2aa) 4.3 (10aa) 1.3 (3aa) 9.8 (23aa) 3.4 (8aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6 (14aa) 0.4 (1aa) 1.3 (3aa) 0.9 (2aa) 2.6 (6aa) 3 (7aa) 5.1 (12aa) 8.1 (19aa) 6 (14aa) 9.4 (22aa)

>KRH_10470 ribonuclease III
GTGACCGCTTTGCCGGATCCCGGCGAACTGCTTGAGCGTCTCGGTGTCGATCTCGACACC
GAGACGCTTCGCATTGCGCTGACGCACCGCTCCTACGCGTACGAGCACCCGGGGGAGGTG
CACAACGAGCGCCTGGAGTTCTTGGGGGACGCCGTGCTGCAGCTCGCGGTCACGGACGAG
ATCTACCACCGCTACCCGGAGTGGGACGAGGGGCGCCTGGCCAAGCTGCGCGCCTCGGTG
GTCTCCGCCCGCGCGCTGGCCGGTGTGGCCCGTTCCCTGGGCCTGGGTCCGCACATCCGC
CTGGGCAAGGGCGAGGTCCGCACCCACGGCAGCGACAAGGCCTCGATCCTCGCGGACACC
ACGGAGGCCGTGATCGGCGCCGTGTACGAGTCCCTGGGGCCCGTGCCCGCCCGTGACCTG
GTGCTGCGGATGATGGTCCCGCTGCTCGAGGACACCCGCGTGCTGCACGAGGGCCGGGAC
TGGAAGACGCACATCGTGGAGCTCGTGGCCCAGCACGGTCTGGGCACGGTGCGCTACGAG
GTGGAGGGCACCGGCCCCGACCACGAACGCCACTTCACCGCGGACGCCGTGGTGGACGGG
AACGTGCTCGGCCACGGGGAGGGCACCTCCAAGAAGGCCGCCGAACGCGCCGCCGCCGCC
AACGCGTGCGAGGCGCTGGCCGCGCGATTCCCCGCGAAGGGCTGA


>KRH_10470 ribonuclease III
MTALPDPGELLERLGVDLDTETLRIALTHRSYAYEHPGEVHNERLEFLGDAVLQLAVTDE
IYHRYPEWDEGRLAKLRASVVSARALAGVARSLGLGPHIRLGKGEVRTHGSDKASILADT
TEAVIGAVYESLGPVPARDLVLRMMVPLLEDTRVLHEGRDWKTHIVELVAQHGLGTVRYE
VEGTGPDHERHFTADAVVDGNVLGHGEGTSKKAAERAAAANACEALAARFPAKG

NBRC No.	clone name	start	stop	length(bp)
G09-002-028	MDFO1S8502F18	1,110,843	1,154,649	43,807
G09-002-029	MDFO1S8503I17	1,129,364	1,163,679	34,316

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.