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CDS Information : KRH_10550

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close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 1,156,468 / 1,155,140 / -
Location complement(1155140..1156468)
Type CDS
Length 1,329 bp (442 aa)

close this sectionAnnotation

Product putative MFS transporter
Gene name
Functional category Environmental Information and Cellular Processing
- Membrane Transport
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR011701
Uniprot:P02981 Pubmed:1517220

close this sectionRelated links to external database

UniProtB2GFM9
INSDBAG29402.1 (DDBJ GenBank EMBL)
UniParcUPI0001733F86

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=1e-127A0JXV2_ARTS2Major facilitator superfamily MFS_1Alignment
2E=1e-125A1R7H6_ARTATPutative transmembrane efflux protein
MFS		Alignment
3E=1e-119A3TP70_9MICOPutative multidrug resistance proteinAlignment
4E=1e-117Q8FQB4_COREFPutative multidrug resistance proteinAlignment
5E=1e-114Q0S2P6_RHOSRMFS superfamily, multidrug transport proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR001958 Tetracycline resistance protein (Family)
 [60-76]  7e-15 PR01035 [117-141]  7e-15 PR01035 [175-197]  7e-15 PR01035 [203-223]  7e-15 PR01035 [288-308]  7e-15 PR01035 [402-421]  7e-15 PR01035
PR01035   TCRTETA
IPR007114 Major facilitator superfamily (Family)
 [50-431]  38.069 PS50850
PS50850   MFS
IPR011701 Major facilitator superfamily MFS-1 (Domain)
 [54-401]  5.7e-59 PF07690
PF07690   MFS_1
IPR011701 Major facilitator superfamily MFS_1 (Family)
 [54-401]  5.7e-59 PF07690
PF07690   MFS_1
IPR016196 Major facilitator superfamily, general substrate transporter (Domain)
 [1-431]  4.5e-75 SSF103473
SSF103473   MFS general substrate transporter
IPR020846 Major facilitator superfamily domain (Domain)
 [50-431]  38.069 PS50850
PS50850   MFS
SignalP No significant hit
TMHMM 
 [53-75]  Transmembrane (i-o) [79-101]  Transmembrane (o-i) [114-136]  Transmembrane (i-o) [140-162]  Transmembrane (o-i) [174-196]  Transmembrane (i-o) [201-223]  Transmembrane (o-i) [250-272]  Transmembrane (i-o) [287-309]  Transmembrane (o-i) [322-344]  Transmembrane (i-o) [404-426]  Transmembrane (o-i)
Transmembrane 10   
SOSUI 
 [50-72]  Transmembrane [82-104]  Transmembrane [110-132]  Transmembrane [142-164]  Transmembrane [177-199]  Transmembrane [201-222]  Transmembrane [247-269]  Transmembrane [285-307]  Transmembrane [317-339]  Transmembrane [343-365]  Transmembrane [396-418]  Transmembrane
Transmembrane 11   

close this sectionCalculated information (Amino acid sequence)

size of protein 442 amino acids
molecular mass 44,256.87 Da
pI 10.54
aa composition
AlaValLeuIlePheTrpProMetGlySer
18.8
(83aa)		10.6
(47aa)		12
(53aa)		3.4
(15aa)		3.8
(17aa)		1.1
(5aa)		7
(31aa)		2
(9aa)		12.9
(57aa)		5.9
(26aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.2
(23aa)		0.7
(3aa)		0.7
(3aa)		2.3
(10aa)		2
(9aa)		1.4
(6aa)		0.5
(2aa)		5.7
(25aa)		2.5
(11aa)		1.6
(7aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-002-029 MDFO1S8503I17 1,129,364 1,163,679 34,316
G09-002-030 MDFO1S8501G11 1,149,222 1,186,702 37,481

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.