CDS Information : KRH_10580

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,159,197 / 1,159,535 / +
Location	1159197..1159535
Type	CDS
Length	339 bp (112 aa)

Product	nitrogen regulatory protein PII Synonym: signal transduction protein
Gene name	glnK Synonym: glnB
Functional category	Environmental Information and Cellular Processing - Signal Transduction
EC number
Note
KEGG pathway	KO:K04751
Sequence feature
References	Family/Domain:IPR002187 Uniprot:Q79VF2 Pubmed:15458411,16194241,14638415 Uniprot:Q8CJR0 Pubmed:12406211

UniProt	B2GFN2
INSD	BAG29405.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733F89

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=3e-35 Q8CJR0_STRCO Nitrogen regulatory protein P-II Alignment 2 E=2e-34 Q82JV4_STRAW Putative nitrogen regulatory protein P-II Alignment 3 E=2e-34 A0LV77_ACIC1 Nitrogen regulatory protein P-II Alignment 4 E=6e-34 A1SLT5_NOCSJ Nitrogen regulatory protein P-II Alignment 5 E=4e-33 A6W7U3_KINRA Nitrogen regulatory protein P-II Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR002187 Nitrogen regulatory protein P-II (Family) PR00340   PIIGLNB PF00543   P-II PD001194   Q8CJR0_STRCO_Q8CJR0; PS00638   PII_GLNB_CTER IPR002332 P-II protein urydylation site (PTM) PS00496   PII_GLNB_UMP IPR011322 Nitrogen regulatory PII-like, alpha/beta (Domain) SSF54913   GlnB-like IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal (Domain) G3DSA:3.30.70.120   no description IPR017918 Nitrogen regulatory protein PII, conserved site (Conserved_site) PS00638   PII_GLNB_CTER
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	112 amino acids
molecular mass	12,194.81 Da
pI	4.92
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 8 (9aa) 19.6 (22aa) 6.3 (7aa) 1.8 (2aa) 0.9 (1aa) 0.9 (1aa) 2.7 (3aa) 1.8 (2aa) 9.8 (11aa) 2.7 (3aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 8.9 (10aa) 0 (0aa) 0 (0aa) 2.7 (3aa) 3.6 (4aa) 4.5 (5aa) 2.7 (3aa) 7.1 (8aa) 7.1 (8aa) 8.9 (10aa)

>KRH_10580 nitrogen regulatory protein PII
GTGAAACTCGTCACCGCAGTGGTGCGCCCCGAGAAGTTCAGCGACGTCAAGGACGCGCTG
GAGGCCTACGGGGTGCAGGGAATGACGGTGCTCACGGTGCACGGCTACGGCCGGCAGCGC
GGGCACCGGGAGGTCTACCGGGGCGCGGAGTACACCGTGGACCTGCTCGAGAAGGTGCGC
ATCGAGACCGTGGTGGAGGACGACGCCGCCCAGGACATCGTCACCGTGGTCGTCAGCGCC
GCGCGCACCGGTGAACCGGGCGACGGCAAGGTGTGGGTCACCCCCGTGGAGCACACGGTG
CGTGTGAGCACCGGGGAACTGGGCGACGTCGCCCTCTGA


>KRH_10580 nitrogen regulatory protein PII
MKLVTAVVRPEKFSDVKDALEAYGVQGMTVLTVHGYGRQRGHREVYRGAEYTVDLLEKVR
IETVVEDDAAQDIVTVVVSAARTGEPGDGKVWVTPVEHTVRVSTGELGDVAL

NBRC No.	clone name	start	stop	length(bp)
G09-002-029	MDFO1S8503I17	1,129,364	1,163,679	34,316
G09-002-030	MDFO1S8501G11	1,149,222	1,186,702	37,481

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.