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CDS Information : KRH_10590

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close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 1,159,721 / 1,161,286 / +
Location 1159721..1161286
Type CDS
Length 1,566 bp (521 aa)

close this sectionAnnotation

Product signal recognition particle protein
Gene name ffh
Functional category Environmental Information and Cellular Processing
- Membrane Transport
EC number
Note
KEGG pathway map:03060 KO:K03106
Sequence feature
References Uniprot:P0AGD7 Pubmed:2171778,1279430,1331806

close this sectionRelated links to external database

UniProtB2GFX8
INSDBAG29406.1 (DDBJ GenBank EMBL)
UniParcUPI0001733FC4

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=0A0JXU8_ARTS2Signal recognition particle subunit FFH/SRP54
Srp54		Alignment
2E=0A1R7H2_ARTATSignal recognition particle proteinAlignment
3E=0A3TRC7_9MICOSignal recognition particle proteinAlignment
4E=0A6W7U5_KINRASignal recognition particle proteinAlignment
5E=0Q82JV6_STRAWPutative signal recognition particle, subunit SRP54Alignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR000897 GTP-binding signal recognition particle SRP54, G-domain (Domain)
 [277-290]  PS00300
PS00300   SRP54
 [99-304]  1.1e-105 PF00448
PF00448   SRP54
 [103-202]  1e-34 PD000819
PD000819   Q8G7G3_BIFLO_Q8G7G3;
IPR003593 AAA+ ATPase, core (Domain)
 [99-309]  2.3e-10 SM00382
SM00382   no description
IPR004125 Signal recognition particle, SRP54 subunit, M-domain (Domain)
 [336-434]  2.6e-48 PF02978
PF02978   SRP_SPB
 [306-438]  5.8e-48 SSF47446
SSF47446   Signal peptide-binding domain
 [336-439]  3.3e-34 G3DSA:1.10.260.30
G3DSA:1.10.260.30   no description
IPR004780 Signal recognition particle protein (Family)
 [74-504]  3.8e-200 PTHR11564:SF7
PTHR11564:SF7   SIGNAL RECOGNITION PARTICLE PROTEIN
 [2-436]  8.6e-252 TIGR00959
TIGR00959   ffh: signal recognition particle protein
IPR013822 Signal recognition particle, SRP54 subunit, helical bundle (Domain)
 [1-87]  2.2e-31 PF02881
PF02881   SRP54_N
 [1-90]  4.3e-29 G3DSA:1.20.120.140
G3DSA:1.20.120.140   no description
 [2-88]  9.8e-25 SSF47364
SSF47364   Domain of the SRP/SRP receptor G-proteins
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 521 amino acids
molecular mass 55,972.01 Da
pI 9.84
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.9
(62aa)		8.4
(44aa)		7.7
(40aa)		3.6
(19aa)		3.8
(20aa)		0.4
(2aa)		4
(21aa)		4
(21aa)		10.4
(54aa)		4.8
(25aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.6
(24aa)		0
(0aa)		2.7
(14aa)		5
(26aa)		0.2
(1aa)		7.1
(37aa)		0.6
(3aa)		7.3
(38aa)		6.9
(36aa)		6.5
(34aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-002-029 MDFO1S8503I17 1,129,364 1,163,679 34,316
G09-002-030 MDFO1S8501G11 1,149,222 1,186,702 37,481

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.