CDS Information : KRH_10790

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,179,620 / 1,178,709 / -
Location	complement(1178709..1179620)
Type	CDS
Length	912 bp (303 aa)

Product	malonyl-CoA--acyl carrier protein transacylase Synonym: [acyl-carrier-protein] S-malonyltransferase
Gene name	fabD
Functional category	Metabolism - Lipid Metabolism
EC number	2.3.1.39
Note	The fatty acid biosynthesis gene cluster; KRH_10790/fabD, KRH_10780/fabH, KRH_10770/acpM, KRH_10760/fabF
KEGG pathway	map:00061 KO:K00645
Sequence feature
References	Uniprot:P63458 Pubmed:11373295

UniProt	B2GFZ8
INSD	BAG29426.1 (DDBJ GenBank EMBL)
UniParc	UPI0001733FD8

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=3e-97 A1R7F1_ARTAT Putative [acyl-carrier-protein] S-malonyltransferase Alignment 2 E=1e-94 A0JXS5_ARTS2 Putative malonyl-CoA:acyl carrier protein malonyltransferase Alignment 3 E=1e-86 Q47NG3_THEFY (Acyl-carrier protein) S-malonyltransferase Alignment 4 E=8e-86 A3TM19_9MICO Acyl-carrier-protein S-malonyltransferase Alignment 5 E=1e-84 A5CRG2_CLAM3 Putative malonyl CoA-acyl carrier protein transacylase Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR001227 Acyl transferase region (Domain) G3DSA:3.40.366.10   no description IPR014043 Acyl transferase (Domain) PF00698   Acyl_transf_1 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase (Domain) SSF52151   FabD/lysophospholipase-like IPR016036 Malonyl-CoA ACP transacylase, ACP-binding (Domain) SSF55048   Probable ACP-binding domain of malonyl-CoA ACP transacylase
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	303 amino acids
molecular mass	30,967.34 Da
pI	4.72
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 18.5 (56aa) 10.6 (32aa) 10.9 (33aa) 2 (6aa) 1.3 (4aa) 0.7 (2aa) 5.9 (18aa) 2.6 (8aa) 9.6 (29aa) 4.3 (13aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.9 (18aa) 1 (3aa) 1.7 (5aa) 3 (9aa) 0.3 (1aa) 2 (6aa) 2.3 (7aa) 5.6 (17aa) 5 (15aa) 6.9 (21aa)

>KRH_10790 malonyl-CoA--acyl carrier protein transacylase
GTGATTGCAGTCGTCTGCCCCGGTCAGGGGTCACAGAAACCAGGATTCCTCAGCGAGTGG
CTGTCCGCCCCGGGCGCCACGGAGCACCTCGCGCGGCTCTCCGACGCCGCCGGTCTGGAC
CTCGCCCACTACGGCACCGAGGCCGACGAGGAGACCATCAAGGACACTGCCGTGGCCCAG
CCGCTCATCGTGGCCGCCGGACTGCTGGCCGGCCGCATGCTCGCGCCGCAGCTCGAGGGC
CGCGACGACGTTGTGCTCGCGGGCCACTCCGTGGGTGAGATCACGGCGGCGGCGCTGGCC
GGTGTGCTCAGCGAGGCGGACGCCATGCGCTTCGTGCGCGTGCGCGCCACGGCGATGGCC
GAGGCCGCGGCGGCAACCCCCACGGGCATGGCTGCCGTGCTGGGCGGCACCCCGGACGGG
GTGGCCGAGTCAATTGCCGCGGTGGGTGCCACAGTCGCGAACGCCAACGGCGGCGGTCAG
GTGGTGGCCGCGGGAACGGTCGAGCAGCTCGACGCCCTCGCCGCGAACCCCCCGGCACGT
GCCAAAGTGGTGCGCCTGAAGGTGGCCGGAGCGTTCCACACGGAGCACATGGCCCCGGCA
CTCGAGCCGCTGCGGGAGCTCGTGCCCGAGCTGAGCGTGCAGGACCCCGCCCACACCCTG
CTCAGCAACCACCGCGGCACCCGGGTCGAGGACGGCCGCGCTTTCCTGGACTCCCTCGTG
GAGCAGGTGTGCCGCCCGGTGCGCTGGGACGCGTGCATGGACACCATGGCGGAGCTGGGC
GTGTCCCGGATCGTGGAGCTGCCGCCGGCAGGCACCCTGGTGGGTCTGGCCAAGCGCGGG
CTCAAGGGCGTGCCGGCCCAGGCCGTGAACACCCCCGAGGACCTCGAGAGCGTGCGGAGT
ACGCTGGCCTGA


>KRH_10790 malonyl-CoA--acyl carrier protein transacylase
MIAVVCPGQGSQKPGFLSEWLSAPGATEHLARLSDAAGLDLAHYGTEADEETIKDTAVAQ
PLIVAAGLLAGRMLAPQLEGRDDVVLAGHSVGEITAAALAGVLSEADAMRFVRVRATAMA
EAAAATPTGMAAVLGGTPDGVAESIAAVGATVANANGGGQVVAAGTVEQLDALAANPPAR
AKVVRLKVAGAFHTEHMAPALEPLRELVPELSVQDPAHTLLSNHRGTRVEDGRAFLDSLV
EQVCRPVRWDACMDTMAELGVSRIVELPPAGTLVGLAKRGLKGVPAQAVNTPEDLESVRS
TLA

NBRC No.	clone name	start	stop	length(bp)
G09-002-030	MDFO1S8501G11	1,149,222	1,186,702	37,481
G09-002-031	MDFO1S8502D19	1,175,092	1,221,890	46,799

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.