CDS Information : KRH_11190

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,231,895 / 1,232,833 / +
Location	1231895..1232833
Type	CDS
Length	939 bp (312 aa)

Product	putative iron-siderophore ABC transporter ATP-binding protein
Gene name
Functional category	Environmental Information and Cellular Processing - Membrane Transport
EC number
Note
KEGG pathway	KO:K02013
Sequence feature
References	Uniprot:P23878 Pubmed:2956250,1838574 Uniprot:Q6TA27 Pubmed:15866930,18156254

UniProt	B2GGC6
INSD	BAG29466.1 (DDBJ GenBank EMBL)
UniParc	UPI00017340A4

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=3e-79 A4WXV1_RHOS5 Putative uncharacterized protein Alignment 2 E=3e-79 A3TV00_9RHOB ABC Fe+3-siderophore transporter, ATPase subunit Alignment 3 E=6e-78 A3PP92_RHOS1 ABC transporter related Alignment 4 E=2e-77 Q3IWR7_RHOS4 ABC Fe+3-siderophore transporter, ATPase subunit Alignment 5 E=6e-76 A6X2S9_OCHA4 ABC transporter related Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR003439 ABC transporter related (Domain) PD000006   Q8NSK5_CORGL_Q8NSK5; PS50893   ABC_TRANSPORTER_2 PF00005   ABC_tran PS00211   ABC_TRANSPORTER_1 IPR003593 AAA+ ATPase, core (Domain) SM00382   no description IPR017871 ABC transporter, conserved site (Conserved_site) PS00211   ABC_TRANSPORTER_1
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	312 amino acids
molecular mass	33,173.60 Da
pI	5.7
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 13.5 (42aa) 10.9 (34aa) 9.6 (30aa) 1.9 (6aa) 1.6 (5aa) 1 (3aa) 4.8 (15aa) 2.2 (7aa) 10.3 (32aa) 3.2 (10aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 8.7 (27aa) 1.3 (4aa) 1 (3aa) 2.9 (9aa) 1 (3aa) 0.6 (2aa) 1.9 (6aa) 10.6 (33aa) 6.7 (21aa) 6.4 (20aa)

>KRH_11190 putative iron-siderophore ABC transporter ATP-binding protein
GTGGCCGTGCGCGGACTGCGGGCCGGCTACGGGGGCGCGCCCGTGCTCACGGACGTGGAC
GTCACGTTCCCCGCGGGGCGCGTCACGGCGCTCGTGGGCGCCAACGGCTGCGGCAAGTCC
ACGCTGCTCCGCACGTGCGCGCGCCAGCTGACACCCACCGCCGGCGAGGTGCTCGTGGGC
GGGGAGGACGTCCGCGGCTGGCGCCGCACCCGTTTTGCGCAGACGGTGGGCTTCCTGCCG
CAGGACCCCGTGGCGCCGGAGGGGGTGAGCGTGCGGGAGCTGGTCTCGCGCGGTCGCCAC
CCGCACCGCGGTGCCTTCGGGCGCTGGCGCGCGGAGGACGACGCCGCCGTGGCCGAGGCG
CTCGAGCTCACCGGTCTGTGCGATCTCATGGACCGCCACGTGACGGACCTCTCCGGGGGG
CAGCGCCAGCGCGTGTGGATCGCCCTGGCCCTGGCTCAGCAGACCGACGTGCTGCTGCTG
GACGAGCCCACCACCTATCTGGACATCGCCCGGCAGGTGGAGATCCTGGACATCCTGTGC
GAGCTGCAGCGTGCCCGGGGGATCACCCTGGTGATGGTGCTGCACGAGCTGTCCCTGGCC
GCGCGCTACGCGGACGTGCTCGTGGCCATGAAGGCCGGCGAGGTGGTGGCCCGCGGCGGG
GCGGAGGAGGTCATGACCGACGAGGTGGTCGGTCGCGTGTTCGACATGGCCGCCCGCGTG
CTGCACGATCCCGTGACCGACGCCCGCGTGGTGATCCCGCTGTCCTCGGACCGGTCGCGA
GCCACGGGGATGGCGGGGGCCGAGACCCCGGCGGATGCCACGGCAAGAACGGCGGGTCGG
ACGACGACCGGACCCACGTCCGGGTCACGGACCGGGACGGCCCGGCCGCACCCGGCCGCA
CGGGACGAGAACGAGGAGAACGGGGAGGTGCCCGCATGA


>KRH_11190 putative iron-siderophore ABC transporter ATP-binding protein
MAVRGLRAGYGGAPVLTDVDVTFPAGRVTALVGANGCGKSTLLRTCARQLTPTAGEVLVG
GEDVRGWRRTRFAQTVGFLPQDPVAPEGVSVRELVSRGRHPHRGAFGRWRAEDDAAVAEA
LELTGLCDLMDRHVTDLSGGQRQRVWIALALAQQTDVLLLDEPTTYLDIARQVEILDILC
ELQRARGITLVMVLHELSLAARYADVLVAMKAGEVVARGGAEEVMTDEVVGRVFDMAARV
LHDPVTDARVVIPLSSDRSRATGMAGAETPADATARTAGRTTTGPTSGSRTGTARPHPAA
RDENEENGEVPA

NBRC No.	clone name	start	stop	length(bp)
G09-002-032	MDFO1S8503K19	1,223,695	1,263,386	39,692

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.