CDS Information : KRH_12090

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,347,642 / 1,348,634 / +
Location	1347642..1348634
Type	CDS
Length	993 bp (330 aa)

Product	WhiA-like protein
Gene name
Functional category	Unclassified - uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References	Uniprot:Q9S4Y1 Pubmed:10986251

UniProt	B2GH83
INSD	BAG29556.1 (DDBJ GenBank EMBL)
UniParc	UPI0001734258

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=1e-130 A0JWP5_ARTS2 Putative uncharacterized protein Alignment 2 E=1e-129 A1R6G8_ARTAT Putative uncharacterized protein Alignment 3 E=1e-121 Q829W5_STRAW Putative sporulation regulatory protein Alignment 4 E=1e-120 Q9S4Y1_STRCO WhiA Alignment 5 E=1e-120 A6WC57_KINRA Putative uncharacterized protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR003802 Protein of unknown function DUF199 (Family) PF02650   DUF199 IPR023054 Sporulation regulator WhiA, C-terminal (Domain) PF02650   DUF199
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	330 amino acids
molecular mass	35,158.25 Da
pI	11.06
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 18.2 (60aa) 9.1 (30aa) 11.5 (38aa) 2.4 (8aa) 1.8 (6aa) 0.6 (2aa) 3 (10aa) 1.5 (5aa) 9.1 (30aa) 3.6 (12aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.8 (16aa) 0.6 (2aa) 1.5 (5aa) 2.1 (7aa) 0 (0aa) 2.1 (7aa) 2.4 (8aa) 13 (43aa) 5.2 (17aa) 7.3 (24aa)

>KRH_12090 WhiA-like protein
ATGGCATTGACCGCCTCGGTCAAGGAAGAACTCGCCCACCTGCAGGTCCGCAAGTCCGCG
GTGCGCGCGGCGGAGCTGTCCGCGCTGCTGCGCTTCGCGGGGGGACTGCACATCGTGGCG
GGGCGGATCGTGGTGGAGGCGGAGCTCGACACCGAGTCCGTGGCGCGCCGCGCGGTGCGC
ACCGTGGGGGAGGTCTTCGGCCACGAGTGCGAACTCGGCGTGATGAGCGGTGGCGGGCTG
CGTCGCGAGCCCACGTGGGTGGTGCGCGTCGCCCGTGACGGTGAGGCCCTCGCGCGGCGC
ACCGGTCTGCTGGACGCGCACGGGCGCCCCGTGCGGGGACTGCCGCCCACCGTGGTCAAC
GGCAGCGTGGACGAGTCGGCCGCGGTGATCCGCGGGGCGTTCCTGGCCCACGGCTCCCTC
ACCGAGCCCGGCCGTGCCGCGGCCATGGAGTTCACGTGCCCCGGCCCGGAGGCCGCCCTC
GCGCTCGTGGGCTCCGCCCGCCGCCTCGACGTGCTGGCCAAGGCCCGCCAGGTGCGCGGC
GTGGACCGGGTGGTGGTGCGCGACGGCGACACGATCGCCGCGCTGCTGACCCGGCTGGGC
GCACACCGGGCGCTGCTGCAGTGGGAGGACCGGCGCATGCGCAAGGAGGTCCGCGCCACT
GCCAACCGGCTCGCCAACTTCGACGACGCGAACCTGCGCCGCTCCGCCCAGGCGGCCGTG
ACGGCCGGCGCCAAGGTGGAGCGCGCCCTCGACATCCTGGGCGACGAGGCCCCCGAGCAC
CTGCGGGCCGCGGGCCGGCTGCGCGTGGCCAACAAGCAGGCGAGCCTCGACGAGCTCGGG
CGGCTGTCCGATCCGCCGCTGACCAAGGACGCGATCGCCGGGCGGATCCGGCGGCTGCTG
GCCATGGCCGACCGCCGGGCCGAGGAGCTGGGGATCGCCACCACCACCGAGTTCGCGGCC
CAGGCCGGAGGGGCGCAGGCGCGGGCCCACTAG


>KRH_12090 WhiA-like protein
MALTASVKEELAHLQVRKSAVRAAELSALLRFAGGLHIVAGRIVVEAELDTESVARRAVR
TVGEVFGHECELGVMSGGGLRREPTWVVRVARDGEALARRTGLLDAHGRPVRGLPPTVVN
GSVDESAAVIRGAFLAHGSLTEPGRAAAMEFTCPGPEAALALVGSARRLDVLAKARQVRG
VDRVVVRDGDTIAALLTRLGAHRALLQWEDRRMRKEVRATANRLANFDDANLRRSAQAAV
TAGAKVERALDILGDEAPEHLRAAGRLRVANKQASLDELGRLSDPPLTKDAIAGRIRRLL
AMADRRAEELGIATTTEFAAQAGGAQARAH

NBRC No.	clone name	start	stop	length(bp)
G09-001-059	MDFO1S8503C22	1,339,838	1,382,067	42,230

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.