CDS Information : KRH_12260

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,367,372 / 1,368,847 / +
Location	1367372..1368847
Type	CDS
Length	1,476 bp (491 aa)

Product	putative iron-sulfur cluster assembly protein SufB
Gene name	sufB
Functional category	Metabolism - Others
EC number
Note	Similar to the SufB protein (Rv1461) of Mycobacterium tuberculosis (P67125).
KEGG pathway	KO:K09014
Sequence feature
References	Uniprot:P77522 Pubmed:12941942 Uniprot:P67125 Pubmed:16621837

UniProt	B2GHA0
INSD	BAG29573.1 (DDBJ GenBank EMBL)
UniParc	UPI000173429A

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=0 A1R6I6_ARTAT FeS assembly protein SufB Alignment 2 E=0 A0JWR3_ARTS2 FeS assembly protein SufB Alignment 3 E=0 Q829T4_STRAW Putative FeS assembly protein SufB Alignment 4 E=0 Q9XAD1_STRCO Putative uncharacterized protein SCO1925 Alignment 5 E=0 Q47NE9_THEFY FeS assembly protein SufB Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000825 SufBD (Family) PF01458   UPF0051 IPR010231 FeS assembly protein SufB (Family) TIGR01980   sufB: FeS assembly protein SufB
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	491 amino acids
molecular mass	54,955.65 Da
pI	4.6
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 8.1 (40aa) 8.1 (40aa) 5.5 (27aa) 6.3 (31aa) 3.1 (15aa) 1.4 (7aa) 3.7 (18aa) 3.5 (17aa) 7.7 (38aa) 6.1 (30aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.5 (32aa) 0.6 (3aa) 4.1 (20aa) 3.7 (18aa) 4.3 (21aa) 4.1 (20aa) 2.2 (11aa) 5.7 (28aa) 5.7 (28aa) 9.6 (47aa)

>KRH_12260 putative iron-sulfur cluster assembly protein SufB
ATGACCGAGCGCATCGACCCCGCGGACACCGCGGGCACCATGACAGGCGACACCACGATT
TCCGAGATCCTGGAGATGAACCCGGAGCTCGAGGGGATCGGCCAGTACCAGTACGGCTGG
GCCGACAAGAACGACGCCGGCGCGTCCGCACGCCGCGGCGTGAACGAGGAAGTGGTCCGG
GACATCTCGGCCAAGAAGAGCGAGCCGGACTGGATGACGCAGCTGCGCCTGAAGGGCCTG
AAGTTCTTCGACCGCAAGCCCATGCCCACGTGGGGCGCGGACCTGTCGGGCATCGACTTC
GACAACATCAAGTACTTCGTGCGCTCCACGGAGCAGCAGGCGGGCTCCTGGGAGGAGCTG
CCCGAGGACATCCGCAACACGTACGAGAAGCTCGGCATCCCCGAGGCGGAGCGCAACCGC
CTGGTGGCCGGTGTGGCCGCGCAGTACGAGTCCGAGGTGGTCTACCACCAGATCCGCGAG
GACCTCGAGGCCCAGGGCGTGATCTTCATGGACACGGACACCGCCCTGAAGGAGCATCCC
GAGTTCTTTGAGGAGTACTTCGGCACCGTGATCCCCGTGGGCGACAACAAGTTCGCCGCG
CTGAACACGGCCGTGTGGTCCGGCGGCTCGTTCGTGTACGTCCCCAAGGGCGTGCACGTG
GACATCCCGCTGCAGGCGTACTTCCGCATCAACACCGAGAACATGGGCCAGTTCGAGCGG
ACGCTGATCATCGCGGACGAGGACTCCTACGTCCACTACATCGAGGGCTGCACCGCGCCG
ATCTACAAGACGGACTCGCTGCACTCCGCCGTGGTGGAGATCATCTGCAAGAAGAACGCC
CGGGTGCGCTACACGACCATCCAGAACTGGTCCAACAACGTGTACAACCTGGTGACCAAG
CGCGCCATCGCCCACGAGGGCGCCACCATGGAGTGGGTGGACGGCAACATCGGCTCCAAG
GTCACCCAGAAGTACCCCGCGGTCTACATGACCGGCGAGCACGCGCGCGGTGAGACCCTG
TCCATCGCGTTCGCGGGCGAGGGCCAGCACCAGGACACCGGCTCCAAGATGGTGCACATC
GCCCCGAACACGTCCTCGTCGATCGTGTCCAAGTCCGTGGCGCGCAACGGCGGGCGCTCC
GCCTACCGCGGCCTCGTGCAGGTGCGCGAGGGCGCCACGCACTCCAAGTCCAACGTGGTG
TGCGACGCCCTGCTGGTGGACACCATCTCCCGTTCGGACACCTACCCCTACGTGGACATC
CGCGAGGACGACGTCACCATGGGCCACGAGGCCACGGTCTCCCGCGTGTCCGAGGAGCAG
CTGTTCTACCTCATGCAGCGCGGCATGCCCGAGGAGGAGGCCATGGCCATGATCGTGCGC
GGCTTCGTGGAGCCGATCGCGCGTGAGCTGCCCATGGAGTACGCGCTCGAGCTCAACCGT
CTCATCGAACTGCAAATGGAAGGATCCGTTGGCTGA


>KRH_12260 putative iron-sulfur cluster assembly protein SufB
MTERIDPADTAGTMTGDTTISEILEMNPELEGIGQYQYGWADKNDAGASARRGVNEEVVR
DISAKKSEPDWMTQLRLKGLKFFDRKPMPTWGADLSGIDFDNIKYFVRSTEQQAGSWEEL
PEDIRNTYEKLGIPEAERNRLVAGVAAQYESEVVYHQIREDLEAQGVIFMDTDTALKEHP
EFFEEYFGTVIPVGDNKFAALNTAVWSGGSFVYVPKGVHVDIPLQAYFRINTENMGQFER
TLIIADEDSYVHYIEGCTAPIYKTDSLHSAVVEIICKKNARVRYTTIQNWSNNVYNLVTK
RAIAHEGATMEWVDGNIGSKVTQKYPAVYMTGEHARGETLSIAFAGEGQHQDTGSKMVHI
APNTSSSIVSKSVARNGGRSAYRGLVQVREGATHSKSNVVCDALLVDTISRSDTYPYVDI
REDDVTMGHEATVSRVSEEQLFYLMQRGMPEEEAMAMIVRGFVEPIARELPMEYALELNR
LIELQMEGSVG

NBRC No.	clone name	start	stop	length(bp)
G09-001-059	MDFO1S8503C22	1,339,838	1,382,067	42,230
G09-002-034	MDFO1S8502D23	1,357,366	1,390,909	33,544

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.