CDS Information : KRH_13270

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Genomic map

Display	Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

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Overview
Genome
Clone

Center position		change
ID		change
Gene name		change

Metabolism

Carbohydrate Metabolism

Glycolysis / Gluconeogenesis

Pyruvate metabolism

Glyoxylate and dicarboxylate metabolism

Propanoate metabolism

Butanoate metabolism

Inositol metabolism

Inositol phosphate metabolism

Citrate cycle (TCA cycle)

Pentose phosphate pathway

Fructose and mannose metabolism

Galactose metabolism

Ascorbate and aldarate metabolism

Starch and sucrose metabolism

Aminosugars metabolism

Nucleotide sugars metabolism

Energy Metabolism

electron transport system

ATP synthesis

Sulfur metabolism

ferredoxin, thioredoxin, rubredoxin

Lipid Metabolism

Fatty acid biosynthesis (path 1)

Fatty acid biosynthesis (path 2)

Fatty acid metabolism

Synthesis and degradation of ketone bodies

Sterols biosynthesis

Glycerolipid metabolism

Phospholipid degradation

Nucleotide Metabolism

Purine metabolism

Pyrimidine metabolism

Amino Acid Metabolism

Glutamate metabolism & Nitrogen assimilation

Arginine and proline metabolism

Histidine metabolism

Tyrosine metabolism

Phenylalanine metabolism

Tryptophan metabolism

Phenylalanine, tyrosine and tryptophan biosynthesis

Urea cycle and metabolism of amino groups

Alanine and aspartate metabolism

Glycine, serine and threonine metabolism

Methionine metabolism

Cysteine metabolism

Valine, leucine and isoleucine degradation

Valine, leucine and isoleucine biosynthesis

Lysine biosynthesis

Lysine degradation

Metabolism of Cofactors and Vitamins

Thiamine metabolism

Riboflavin metabolism

Vitamin B6 metabolism

Nicotinate and nicotinamide metabolism

Pantothenate and CoA biosynthesis

Biotin metabolism

Folate biosynthesis

Porphyrin and chlorophyll metabolism

Ubiquinone biosynthesis

Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics

Degradation of aromatic compounds

Degradation of others

Others

Genetic Information Processing

Transcription

RNA polymerase

HTH family transcriptional regulators

sigma factor

Translation

Ribosome

Translation factors

Aminoacyl-tRNA biosynthesis

Replication and Repair

DNA polymerase

Replication complex

Others

Environmental Information and Cellular Processing

Membrane Transport

ABC transporter

transporters

Protein export

Phosphotransferase system (PTS)

Signal Transduction

Two-component system

Cellular Processes

Peptidoglycan biosynthesis

Cell wall/membrane/envelope biogenesis

Cell division

Cell Motility

Others

Unclassified

putative function (general)

uncharacterized protein

Transposon-related functions

hypothetical protein

hypothetical protein (prediction only)

Genome	Display	Sync
chromosome

Location

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,495,471 / 1,494,053 / -
Location	complement(1494053..1495471)
Type	CDS
Length	1,419 bp (472 aa)

Annotation

Product	putative phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase Synonym: coenzyme A biosynthesis bifunctional protein CoaBC Synonym: DNA/pantothenate metabolism flavoprotein Dfp
Gene name	coaBC Synonym: dfp
Functional category	Metabolism - Metabolism of Cofactors and Vitamins
EC number	4.1.1.36 6.3.2.5
Note	bifunctional protein
KEGG pathway	map:00770 KO:K01598,K01922
Sequence feature
References	Uniprot:P0ABQ0 Pubmed:10922366,11358972,12140293,14686929

UniProt	B2GI82
INSD	BAG29674.1 (DDBJ GenBank EMBL)
UniParc	UPI00017343AE

Computational search results

BLASTP
Database:UniProtKB:12.5

show BLAST table

1	E=1e-127	A0JX67_ARTS2	Phosphopantothenate-cysteine ligase / Phosphopantothenoylcysteine decarboxylase	Alignment
2	E=1e-127	A1R6Y8_ARTAT	Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase	Alignment
3	E=1e-114	A6WCB5_KINRA	Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase	Alignment
4	E=1e-112	A1SJF8_NOCSJ	Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase	Alignment
5	E=1e-108	A4FBI3_SACEN	DNA/pantothenate metabolism flavoprotein	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:16.0

IPR003382 Flavoprotein (Domain)
	PF02441 Flavoprotein
	SSF52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
	G3DSA:3.40.50.1950 no description
IPR005252 Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (Family)
	TIGR00521 coaBC_dfp: phosphopantothenoylcysteine deca
IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal (Domain)
	SSF102645 Phosphopantothenoylcysteine synthetase
	G3DSA:3.40.50.10300 no description
	PF04127 DFP

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

No significant hit

Calculated information (Amino acid sequence)

size of protein

472 amino acids

molecular mass

48,451.55 Da

6.09

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
17.2 (81aa)	10.8 (51aa)	8.9 (42aa)	1.7 (8aa)	1.5 (7aa)	0.4 (2aa)	6.1 (29aa)	1.7 (8aa)	10.2 (48aa)	5.7 (27aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
6.6 (31aa)	0.2 (1aa)	1.3 (6aa)	1.7 (8aa)	0.2 (1aa)	1.9 (9aa)	3.4 (16aa)	8.1 (38aa)	6.1 (29aa)	6.4 (30aa)

Sequence

>KRH_13270 putative phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase
GTGACGCAGCCGCACTCCGGCCACGCCCCCGCTCCCGTCCGGCCCGCGCCCCTGCGCGTG
GTGCTGGGCGTGGGCGGGGGCATCGCCGCATACAAGGCCGCGCTGGTCTCGCGGCTGCTG
TCCGAGGCGGGCCACCACGTGGTGCCCATGCCCACGCGGGCGGCGCTCGAGTTCGTGGGC
GCACCCACGTGGGAGGCGCTCACGGGGGAGCACGTCTCGGAGTCCGTGTTCGACCGCGTG
GACACCGTCAACCACGTGGCGCAGGGCCAGGCCGCGGACCTCGTGGTGATCGCCCCCGCC
ACCGCGGACCTGATGGCGCGCCTCGCCCACGGCCACGCGGACGACCTGCTGAGCACCACG
GTGCTCGCCACCTCGGCCCCGGTGCTGCTCGCCCCGGCCATGCACACCGAGATGTGGCTC
AACCCCGCCACGCAGCGCAACGTGGCCCTGCTGCGGGAGCACGGCCACACGGTCATGGAG
CCCGCCACGGGCCGTCTCACCGGCACGGACAGCGGCCCCGGCCGGCTGCCCGAGCCGCCG
CAGATCGTCGACGCCGCACTGGCCCTTGCCGAGCGCGCGGCCCGTGCCTCCGGGACGGGA
CCGTCCGGTGCGGCCTCGTCGTCCGCCGGGACCCCCACGGACTCCGCCGCGGCCGGGTCC
GCGGGTTCTGTCGCTCCCGCGCACGACGCCGCTGGGGCCCCTGCCACGGGCGGCGACGCC
CCGCGCTCCGGTGCCCTGGCCGGGCGGCGCGTGCTGGTCACGGCCGGCGGCACCCGCGAG
GCCCTGGACCCCGTGCGATTCCTGGGCAACCGCTCCTCGGGCAAGCAGGGCGTGGCCCTG
GCCCGCGCGGCCCGCGAGGCCGGTGCGGACGTCCACCTGATCGCGGCCCACGTGGAGACC
CCCCTGCCGGAGGACCTGCGGATCACCCGGGTGTCCTCCGCGCGCGAGCTCGAGGAAGCG
ACGCTCACGGCGGCGGCCGAGAGCGACGTCGTGGTCATGGCGGCCGCCGTGGCGGACTTC
CGCCCGGACACCGTGGGCGAGCACAAGATGAAGAAGTCCGAGGACGGCACGGACCCCGTG
ATCCGGCTGGTGCGCAACCCGGACATCCTGCGCGCCGTGGTCGCGCGACGGGACGAGCGC
GGGCCGGACCAGCTCGTGGTGGGCTTCGCGGCGGAGACCGGGGACGGCGAGCACTCGGTG
CTCGAGTTCGGTCGCGCCAAGCTGGCCCGCAAGGGCTGCGACCTGCTCGTGGTCAACGAG
GTGGGCACCGACAAGGTCTTCGGCCGGGACGACACCGAGGTGCTCGTGCTCTCCGCCCGC
GGCGGGGAGGAGACTTCCGTGCGGGGCAGCAAGGACGAGGTCGCGCGTGCGGTCGTGCAG
CGCATCGCGCGCGAACTGGGTGTCGGCGACGCCGGGTAA


>KRH_13270 putative phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase
MTQPHSGHAPAPVRPAPLRVVLGVGGGIAAYKAALVSRLLSEAGHHVVPMPTRAALEFVG
APTWEALTGEHVSESVFDRVDTVNHVAQGQAADLVVIAPATADLMARLAHGHADDLLSTT
VLATSAPVLLAPAMHTEMWLNPATQRNVALLREHGHTVMEPATGRLTGTDSGPGRLPEPP
QIVDAALALAERAARASGTGPSGAASSSAGTPTDSAAAGSAGSVAPAHDAAGAPATGGDA
PRSGALAGRRVLVTAGGTREALDPVRFLGNRSSGKQGVALARAAREAGADVHLIAAHVET
PLPEDLRITRVSSARELEEATLTAAAESDVVVMAAAVADFRPDTVGEHKMKKSEDGTDPV
IRLVRNPDILRAVVARRDERGPDQLVVGFAAETGDGEHSVLEFGRAKLARKGCDLLVVNE
VGTDKVFGRDDTEVLVLSARGGEETSVRGSKDEVARAVVQRIARELGVGDAG

Covered clones

NBRC No.	clone name	start	stop	length(bp)
G09-001-064	MDFO1S8503M16	1,458,943	1,498,273	39,331
G09-001-065	MDFO1S8501M17	1,487,133	1,516,135	29,003

Distribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.

CDS Information : KRH_13270

Genomic map

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

Location

Annotation

Related links to external database

Computational search results

Calculated information (Amino acid sequence)

Sequence

Covered clones

Distribution of Our Microbial Genomic DNA clones