CDS Information : KRH_13490

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Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,517,752 / 1,517,114 / -
Location	complement(1517114..1517752)
Type	CDS
Length	639 bp (212 aa)

Product	30S ribosomal protein S4
Gene name	rpsD
Functional category	Genetic Information Processing - Translation
EC number
Note
KEGG pathway	map:03010 KO:K02986
Sequence feature
References	HAMAP:MF_01306_B

UniProt	B2GIA4
INSD	BAG29696.1 (DDBJ GenBank EMBL)
UniParc	UPI00017343F9

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=7e-83 RS4_ARTS2 30S ribosomal protein S4 Alignment 2 E=2e-79 RS4_ARTAT 30S ribosomal protein S4 Alignment 3 E=3e-75 RS4_LEIXX 30S ribosomal protein S4 Alignment 4 E=3e-75 A7BCJ8_9ACTO Putative uncharacterized protein Alignment 5 E=7e-75 A5CRZ7_CLAM3 30S ribosomal protein S4 Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR001912 Ribosomal protein S4/S9, N-terminal (Domain) PF00163   Ribosomal_S4 IPR001912 Ribosomal protein S4 (Family) PF00163   Ribosomal_S4 PTHR11831   30S 40S RIBOSOMAL PROTEIN IPR001912 Ribosomal protein S4 (Region) PF00163   Ribosomal_S4 PTHR11831   30S 40S RIBOSOMAL PROTEIN IPR002942 RNA-binding S4 domain (Domain) SM00363   no description PF01479   S4 PS50889   S4 G3DSA:3.10.290.10   no description IPR005709 Ribosomal protein S4, bacterial and organelle form (Family) TIGR01017   rpsD_bact: ribosomal protein S4
SignalP	Bacteria, Gram-positive
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	212 amino acids
molecular mass	24,487.09 Da
pI	10.89
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 10.4 (22aa) 9 (19aa) 7.1 (15aa) 3.3 (7aa) 1.4 (3aa) 0 (0aa) 5.7 (12aa) 3.3 (7aa) 4.2 (9aa) 4.2 (9aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.7 (10aa) 0.5 (1aa) 2.4 (5aa) 6.6 (14aa) 4.2 (9aa) 4.7 (10aa) 2.8 (6aa) 14.2 (30aa) 4.2 (9aa) 7.1 (15aa)

>KRH_13490 30S ribosomal protein S4
TTGTCCCAGAACAACAGCTCCCGTGCGCGCCGCCAGGTGCGCAAGTCCCGCGCCCTCGGC
ATCGCGCTGACGCCGAAGGCCGAGAAGTACTTCGAGCGCCGCCCGTACGCACCCGGCGAG
CACGGCCGTGCCCGCCGCAAGCAGGACTCCGACTACAAGGTGCGCCTGACCGAGAAGCAG
CGGCTGCGCGCGCAGTACAACATCCGCGAGAAGCAGATGCACCGCGCCTACGTGGAGGCC
AAGCGCGTCGAGGGCCAGACCGGTGAGAACCTCATCGCCCTGCTCGAGACCCGCCTGGAC
GCCCTCGTGCTGCGCGCGGGCTTCGTCCGCACGATGGCCGCGGCCCGCCAGGCCGTGGTG
CACCGCCACATCATGGTGGACGGCCAGCGCGTGGACCGTCCCTCGTACCGCGTGCGCCCG
GGTCAGATGATCCACGTGCACCCGCGCTCCGAGAAGATGGTGCCGTTCCAGATCGCCGCG
ACCGGTGCGAACCAGGACGTCCTGCCGGACACCCCGCCGTACCTCGACGTGACGATCGAC
CGGCTGCAGGCCACGCTCTCGCGCAAGCCGGAGCGCTCCGAGGTCCCCGTGACCTGCGAG
GAGCAGCTCGTGGTCGAGTACTACGCACGCATGGCCTGA


>KRH_13490 30S ribosomal protein S4
MSQNNSSRARRQVRKSRALGIALTPKAEKYFERRPYAPGEHGRARRKQDSDYKVRLTEKQ
RLRAQYNIREKQMHRAYVEAKRVEGQTGENLIALLETRLDALVLRAGFVRTMAAARQAVV
HRHIMVDGQRVDRPSYRVRPGQMIHVHPRSEKMVPFQIAATGANQDVLPDTPPYLDVTID
RLQATLSRKPERSEVPVTCEEQLVVEYYARMA

NBRC No.	clone name	start	stop	length(bp)
G09-002-038	MDFO1S8503M18	1,503,502	1,544,172	40,671

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.