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CDS Information : KRH_14660

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close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 1,657,064 / 1,655,607 / -
Location complement(1655607..1657064)
Type CDS
Length 1,458 bp (485 aa)

close this sectionAnnotation

Product 6-phosphogluconate dehydrogenase
Gene name gnd
Functional category Metabolism
- Carbohydrate Metabolism
EC number 1.1.1.44
Note
KEGG pathway map:00030 KO:K00033
Sequence feature
References Uniprot:P00350 Pubmed:12670695
Uniprot:P96789 Pubmed:9931298

close this sectionRelated links to external database

UniProtB2GJN2
INSDBAG29813.1 (DDBJ GenBank EMBL)
UniParcUPI00017345F0

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=0A1R7D6_ARTAT6-phosphogluconate dehydrogenase, decarboxylatingAlignment
2E=0A0JXQ8_ARTS26-phosphogluconate dehydrogenase, decarboxylatingAlignment
3E=1e-169A1T9P1_MYCVP6-phosphogluconate dehydrogenase, decarboxylatingAlignment
4E=1e-168A0QGL9_MYCA16-phosphogluconate dehydrogenase, decarboxylatingAlignment
5E=1e-168Q0S0C6_RHOSR6-phosphogluconate dehydrogenase, decarboxylatingAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR006113 6-phosphogluconate dehydrogenase, decarboxylating (Family)
 [8-478]  1.3e-278 TIGR00873
TIGR00873   gnd: 6-phosphogluconate dehydrogenase, deca
IPR006114 6-phosphogluconate dehydrogenase, C-terminal (Domain)
 [183-477]  7.3e-205 PF00393
PF00393   6PGD
IPR006115 6-phosphogluconate dehydrogenase, NAD-binding (Domain)
 [6-179]  2.3e-90 PF03446
PF03446   NAD_binding_2
IPR006183 6-phosphogluconate dehydrogenase (Family)
 [7-30]  3.7e-78 PR00076 [70-99]  3.7e-78 PR00076 [123-148]  3.7e-78 PR00076 [172-200]  3.7e-78 PR00076 [254-281]  3.7e-78 PR00076 [365-387]  3.7e-78 PR00076
PR00076   6PGDHDRGNASE
IPR006184 6-phosphogluconate-binding site (Binding_site)
 [258-270]  PS00461
PS00461   6PGD
IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like (Domain)
 [181-480]  2.2e-108 SSF48179
SSF48179   6-phosphogluconate dehydrogenase C-terminal domain-like
IPR012284 Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (Domain)
 [444-485]  4e-08 G3DSA:1.20.5.320
G3DSA:1.20.5.320   no description
IPR013328 Dehydrogenase, multihelical (Domain)
 [185-443]  2e-90 G3DSA:1.10.1040.10
G3DSA:1.10.1040.10   no description
IPR016040 NAD(P)-binding domain (Domain)
 [6-180]  1.2e-57 SSF51735
SSF51735   NAD(P)-binding Rossmann-fold domains
 [5-184]  2.8e-60 G3DSA:3.40.50.720
G3DSA:3.40.50.720   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 485 amino acids
molecular mass 52,605.37 Da
pI 4.56
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.8
(57aa)		7.8
(38aa)		8.9
(43aa)		5.4
(26aa)		2.9
(14aa)		1.4
(7aa)		4.3
(21aa)		2.5
(12aa)		9.3
(45aa)		5.8
(28aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.7
(23aa)		0.8
(4aa)		2.9
(14aa)		2.5
(12aa)		2.7
(13aa)		3.1
(15aa)		2.1
(10aa)		6.4
(31aa)		6.6
(32aa)		8.2
(40aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-002-041 MDFO1S8502N10 1,627,233 1,658,782 31,550
G09-002-042 MDFO1S8503E21 1,649,995 1,692,514 42,520

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.