small fontnormal fontlarge fontmail to

CDS Information : KRH_14810

close allopen/close all

close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

 Legend Jump
Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 1,674,591 / 1,673,185 / -
Location complement(1673185..1674591)
Type CDS
Length 1,407 bp (468 aa)

close this sectionAnnotation

Product UDP-N-acetylmuramate--L-alanine ligase
Synonym: UDP-N-acetylmuramoyl-L-alanine synthetase
Gene name murC
Functional category Environmental Information and Cellular Processing
- Cellular Processes
EC number 6.3.2.8
Note
KEGG pathway map:00471 KO:K01924
Sequence feature
References HAMAP:MF_00046

close this sectionRelated links to external database

UniProtB2GJP7
INSDBAG29828.1 (DDBJ GenBank EMBL)
UniParcUPI0001734635

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=1e-134A1R5F9_ARTATUDP-N-acetylmuramate--alanine ligaseAlignment
2E=1e-130A0JV95_ARTS2UDP-N-acetylmuramate--L-alanine ligaseAlignment
3E=1e-129A6WCX3_KINRAUDP-N-acetylmuramate--alanine ligaseAlignment
4E=1e-119MURC_THEFYUDP-N-acetylmuramate--L-alanine ligase
UDP-N-acetylmuramoyl-L-alanine synthetase		Alignment
5E=1e-118A3TJS7_9MICOUDP-N-acetylmuramate--alanine ligaseAlignment
HAMAP
Database:HAMAP:20070519 
 [12-467]  36.246 MF_00046
MF_00046   MURC
InterPro
Database:interpro:16.0
IPR000713 Cytoplasmic peptidoglycan synthetase, N-terminal (Domain)
 [14-113]  1.5e-31 PF01225
PF01225   Mur_ligase
IPR004101 Mur ligase, C-terminal (Domain)
 [321-465]  1.3e-40 SSF53244
SSF53244   MurD-like peptide ligases, peptide-binding domain
 [322-409]  3.2e-26 PF02875
PF02875   Mur_ligase_C
 [321-465]  3e-40 G3DSA:3.90.190.20
G3DSA:3.90.190.20   no description
IPR005758 UDP-N-acetylmuramate-alanine ligase (Family)
 [14-462]  9.1e-163 TIGR01082
TIGR01082   murC: UDP-N-acetylmuramate--alanine ligase
 [117-467]  1.4e-104 PTHR23135:SF5
PTHR23135:SF5   UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE
IPR012237 UDP-N-acetylmuramate-alanine ligase (Family)
 [13-462]  1.4e-77 PIRSF001562
PIRSF001562   UDP-N-acetylmuramate-alanine ligase
IPR013221 Mur ligase, central (Domain)
 [100-320]  5.7e-57 SSF53623
SSF53623   MurD-like peptide ligases, catalytic domain
 [115-302]  1.8e-30 PF08245
PF08245   Mur_ligase_M
 [101-321]  1.2e-58 G3DSA:3.40.1190.10
G3DSA:3.40.1190.10   no description
IPR016040 NAD(P)-binding domain (Domain)
 [1-100]  1.3e-25 G3DSA:3.40.50.720
G3DSA:3.40.50.720   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 468 amino acids
molecular mass 48,053.84 Da
pI 6.1
aa composition
AlaValLeuIlePheTrpProMetGlySer
19
(89aa)		9.2
(43aa)		8.1
(38aa)		1.9
(9aa)		3.4
(16aa)		0.4
(2aa)		4.5
(21aa)		1.5
(7aa)		11.8
(55aa)		4.5
(21aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6
(28aa)		1.1
(5aa)		1.3
(6aa)		2.1
(10aa)		1.1
(5aa)		0.6
(3aa)		4.1
(19aa)		7.9
(37aa)		6
(28aa)		5.6
(26aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-002-042 MDFO1S8503E21 1,649,995 1,692,514 42,520
G09-002-043 MDFO1S8502I17 1,671,320 1,711,203 39,884

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.