DOGAN: CDS Information : KRH

Display	Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

Overview
Genome
Clone

Center position		change
ID		change
Gene name		change

Metabolism

Carbohydrate Metabolism

Glycolysis / Gluconeogenesis

Pyruvate metabolism

Glyoxylate and dicarboxylate metabolism

Propanoate metabolism

Butanoate metabolism

Inositol metabolism

Inositol phosphate metabolism

Citrate cycle (TCA cycle)

Pentose phosphate pathway

Fructose and mannose metabolism

Galactose metabolism

Ascorbate and aldarate metabolism

Starch and sucrose metabolism

Aminosugars metabolism

Nucleotide sugars metabolism

Energy Metabolism

electron transport system

ATP synthesis

Sulfur metabolism

ferredoxin, thioredoxin, rubredoxin

Lipid Metabolism

Fatty acid biosynthesis (path 1)

Fatty acid biosynthesis (path 2)

Fatty acid metabolism

Synthesis and degradation of ketone bodies

Sterols biosynthesis

Glycerolipid metabolism

Phospholipid degradation

Nucleotide Metabolism

Purine metabolism

Pyrimidine metabolism

Amino Acid Metabolism

Glutamate metabolism & Nitrogen assimilation

Arginine and proline metabolism

Histidine metabolism

Tyrosine metabolism

Phenylalanine metabolism

Tryptophan metabolism

Phenylalanine, tyrosine and tryptophan biosynthesis

Urea cycle and metabolism of amino groups

Alanine and aspartate metabolism

Glycine, serine and threonine metabolism

Methionine metabolism

Cysteine metabolism

Valine, leucine and isoleucine degradation

Valine, leucine and isoleucine biosynthesis

Lysine biosynthesis

Lysine degradation

Metabolism of Cofactors and Vitamins

Thiamine metabolism

Riboflavin metabolism

Vitamin B6 metabolism

Nicotinate and nicotinamide metabolism

Pantothenate and CoA biosynthesis

Biotin metabolism

Folate biosynthesis

Porphyrin and chlorophyll metabolism

Ubiquinone biosynthesis

Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics

Degradation of aromatic compounds

Degradation of others

Others

Genetic Information Processing

Transcription

RNA polymerase

HTH family transcriptional regulators

sigma factor

Translation

Ribosome

Translation factors

Aminoacyl-tRNA biosynthesis

Replication and Repair

DNA polymerase

Replication complex

Others

Environmental Information and Cellular Processing

Membrane Transport

ABC transporter

transporters

Protein export

Phosphotransferase system (PTS)

Signal Transduction

Two-component system

Cellular Processes

Peptidoglycan biosynthesis

Cell wall/membrane/envelope biogenesis

Cell division

Cell Motility

Others

Unclassified

putative function (general)

uncharacterized protein

Transposon-related functions

hypothetical protein

hypothetical protein (prediction only)

Genome	Display	Sync
chromosome

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,675,753 / 1,674,620 / -
Location	complement(1674620..1675753)
Type	CDS
Length	1,134 bp (377 aa)

Product	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
Gene name	murG
Functional category	Environmental Information and Cellular Processing - Cellular Processes
EC number	2.4.1.227
Note
KEGG pathway	map:00550 KO:K02563
Sequence feature
References	HAMAP:MF_00033

UniProt	B2GJP8
INSD	BAG29829.1 (DDBJ GenBank EMBL)
UniParc	UPI0001734636

BLASTP
Database:UniProtKB:12.5

show BLAST table

1	E=1e-121	A0JV94_ARTS2	UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase precursor	Alignment
2	E=1e-118	A1R5F8_ARTAT	Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	Alignment
3	E=1e-105	A3TJS6_9MICO	N-acetylglucosaminyl transferase	Alignment
4	E=1e-96	A1SL80_NOCSJ	UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	Alignment
5	E=3e-95	A6WCX4_KINRA	UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	Alignment

HAMAP
Database:HAMAP:20070519

MF_00033 MURG

InterPro
Database:interpro:16.0

IPR004276 Glycosyl transferase, family 28 (Domain)
	PF03033 Glyco_transf_28
IPR006009 N-acetylglucosaminyltransferase, MurG (Family)
	TIGR01133 murG: undecaprenyldiphospho-muramoylpentape
IPR007235 Glycosyltransferase 28, C-terminal (Domain)
	PF04101 Glyco_tran_28_C

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

No significant hit

size of protein

377 amino acids

molecular mass

39,201.05 Da

pI

10.51

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
18 (68aa)	12.5 (47aa)	8.2 (31aa)	2.9 (11aa)	1.6 (6aa)	0 (0aa)	6.1 (23aa)	2.4 (9aa)	9 (34aa)	4 (15aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
6.6 (25aa)	0.8 (3aa)	1.6 (6aa)	4 (15aa)	1.6 (6aa)	0.3 (1aa)	1.9 (7aa)	10.3 (39aa)	4 (15aa)	4.2 (16aa)

>KRH_14820 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
ATGACGTCCGAACACGGTCCGGCACAGAGCCCCCAGCGCGCGGGCTCCGCGCGCGTGGTG
CTCGCCGGCGGCGGCACCGCCGGGCACATCAGCCCCCTGCTGGCCATCGCCCGCGCCATC
CAGGAGGCCCGGGCGGACGTGAGCGTGTGCGCCGTGGGCACGGCCTCGGGCATGGAGACC
CGGCTCGTGCCGGCAGCGGGCGTGCCGCTCGAGCTGATCGAGCGCGTGCCGCTGCCCCGG
AGGCCATCCGTGGACCTCGTGCGCCTGCCGCGCCGCATGGCCACCGCTGTGCACCAGGCC
GGACGGATCCTGGACTCCCAGCAGGCCACCGTGGTGGTGGGCGTGGGCGGCTACGTGTGC
ACGCCCGTGTACCTCGCGGCCGCGCGGCGTCGGATCCCCGTGGTGATCCACGAGGCCAAC
GCCCGGCCCGGGATCGCCAACCGGGTGGGCGCGCGCTTCGCGTCCGTGGTGGCCACCGCG
TTCCCGGACACCCCGCTGCGCGGGGCCCGCGTGGTGGGGATGCCCATGCGGGAGGAGATC
GCCACCCTGGACCGCGCCGCGCACCGGGCACGGGCGCGGCTGGCCCTGGGACTGCAGCCG
GACCTGCCCACCGTGGTGGTCACGGGCGGCTCCTCCGGGGCCCAGTCCATGAACCGTACC
GTGGCCGCGGTCGCCTCCGAGATCGGTGGCCGGGGCTACCAGGTGCTGCACGTGACCGGG
CGGACCAAAGAGGTCCGCACCCCGGACGGCGAGCTGCTGCGGGCCGAGAACTACGTGCAG
ACCGAGTTCGTGGACGGCATGGAGACCGTGTACGCGGCCGCGGACCTGCTGGTCGCGCGC
GCCGGCGCCGCCACGGTGTGCGAGGTCGCTGCCGTGGGACTGCCCGCCGTGTTCGTCCCG
CTGCCCATCGGCAACGGGGAGCAGGCCCTCAACGCGCGCTCCCTCGTGGCTGCCGGGGGA
GCGCAGCTCGTCACCGACGCCCAGTTCACCCCCCAGTTCTACCGGGACACCGTGGCACCG
CTCGTCACCGACACCGCCCGCCTGGACCGCATGGCCCGGGCCTCGGCGGCCCACGGCGTG
CGCGACGCCGCCCAGGTGATGGCCCGCCTGACCCTCGACGCCGCCCGCGCCTGA


>KRH_14820 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
MTSEHGPAQSPQRAGSARVVLAGGGTAGHISPLLAIARAIQEARADVSVCAVGTASGMET
RLVPAAGVPLELIERVPLPRRPSVDLVRLPRRMATAVHQAGRILDSQQATVVVGVGGYVC
TPVYLAAARRRIPVVIHEANARPGIANRVGARFASVVATAFPDTPLRGARVVGMPMREEI
ATLDRAAHRARARLALGLQPDLPTVVVTGGSSGAQSMNRTVAAVASEIGGRGYQVLHVTG
RTKEVRTPDGELLRAENYVQTEFVDGMETVYAAADLLVARAGAATVCEVAAVGLPAVFVP
LPIGNGEQALNARSLVAAGGAQLVTDAQFTPQFYRDTVAPLVTDTARLDRMARASAAHGV
RDAAQVMARLTLDAARA

NBRC No.	clone name	start	stop	length(bp)
G09-002-042	MDFO1S8503E21	1,649,995	1,692,514	42,520
G09-002-043	MDFO1S8502I17	1,671,320	1,711,203	39,884

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.

CDS Information : KRH_14820

Genomic map

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

Location

Annotation

Related links to external database

Computational search results

Calculated information (Amino acid sequence)

Sequence

Covered clones

Distribution of Our Microbial Genomic DNA clones