CDS Information : KRH_14880

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,684,960 / 1,683,107 / -
Location	complement(1683107..1684960)
Type	CDS
Length	1,854 bp (617 aa)

Product	peptidoglycan synthase FtsI precursor Synonym: peptidoglycan glycosyltransferase 3 Synonym: penicillin-binding protein 3
Gene name	ftsI Synonym: pbpB
Functional category	Environmental Information and Cellular Processing - Cellular Processes
EC number	2.4.1.129
Note
KEGG pathway	map:00550 KO:K03587
Sequence feature
References	Family/Domain:IPR001460 Uniprot:P0AD68 Pubmed:9882665,11807049

UniProt	B2GJQ4
INSD	BAG29835.1 (DDBJ GenBank EMBL)
UniParc	UPI000173463C

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=1e-151 A1R5F2_ARTAT Penicillin binding protein transpeptidase domain Alignment 2 E=1e-150 A0JV88_ARTS2 Peptidoglycan glycosyltransferase precursor Alignment 3 E=1e-107 A5CS57_CLAM3 Putative peptidoglycan glycosyltransferase/penicillin-binding protein Alignment 4 E=1e-100 A0LTL7_ACIC1 Peptidoglycan glycosyltransferase Alignment 5 E=5e-98 A4AKK9_9ACTN Penicillin binding protein, transpeptidase domain Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR001460 Penicillin-binding protein, transpeptidase (Domain) PF00905   Transpeptidase IPR005311 Penicillin-binding protein, dimerisation domain (Domain) PF03717   PBP_dimer SSF56519   Penicillin binding protein dimerisation domain IPR012338 Beta-lactamase/transpeptidase-like (Domain) SSF56601   beta-lactamase/transpeptidase-like G3DSA:3.40.710.10   no description
SignalP	Bacteria, Gram-positive
TMHMM	Transmembrane 1
SOSUI	Transmembrane 1

size of protein	617 amino acids
molecular mass	65,585.61 Da
pI	4.9
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 10.2 (63aa) 9.6 (59aa) 7 (43aa) 3.7 (23aa) 2.1 (13aa) 0.6 (4aa) 6.5 (40aa) 1.9 (12aa) 9.7 (60aa) 6 (37aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 9.1 (56aa) 0 (0aa) 2.3 (14aa) 6.8 (42aa) 2.4 (15aa) 4.2 (26aa) 0.8 (5aa) 5.3 (33aa) 6.3 (39aa) 5.3 (33aa)

>KRH_14880 peptidoglycan synthase FtsI precursor
GTGCCAGCATCACCCGCGCGCAGGAACCGCCTGCTCCGGCCCTACACGCGCATGCAGGTG
GGGATCGCCGTCCTGCTGGTGCTGCTGCTGCTGGTCATGGGACGGCTGTTCTGGGTGCAG
GGCCTGGACCCCGCGGGGCGCGCGGACGCCGCGGCGGCGCAGCGCACCCTGGTGGAGCCG
ATCCCGGCGGTGCGCGGTGAGATCACCGACACGCGCGGCACGGTGCTCGCCCGGACCCTG
CAGCGCTATGACATCACGGTGGACCAGTCCGCGGTCACGGAGGTCGCGGTGCCCCAGAAG
GACGGCTCCACCCAGACCGTGACCCCCACCCAGGCGGTGTACAAGATCGCCGACGCGCTA
GGCATGAAGGACACCGACGTCAAGAAGGCCCTGGACGGGGACAAGACCTTCAACTACGTG
GCGCGCGGTGTCACCCCGGAGCAGTACAACGCCCTGCGCGAGCTGAACCTGCCGTACATC
TACGGCCAGCCCACGTTCCAGCGCAGCTACCCGGACGGTTCCCTGGGCGGTTCCGTGGTC
GGGTTCCTGGGCGGGGACAGCGAGGCCCTGGGGGGGATCGAGCAGACGCAGGACGCCTCG
CTGCGCGGCACGGACGGCGAGCGCCGCTTCGAGATCTCCGGGGACGGCGTGCGCATCCCC
GTGGCGCCCCAGGAGCAGAAGGCCGCCCAGAACGGCTCGGACGTGAAGCTCTCCCTGGAC
AGCGACGTCCAGTTCTTCGCGGAGCAGGCGGTGCGCGAGCGCGCCAAGCAGCTCAAGGCC
GAGTGGGGCACGGCGGTGGTGCTGGACGTGAAGACCGGCAAGGTGCTCGCGCTCGCGGAC
ACCTCCTCGGTGGATCCGAACGTGCCGGGCAAGGCCAAGGCGGAGGACCTCTCCTCGCGG
GCCGTGACGCAGGCGGTCGAGCCCGGGTCCACGGAGAAGATCGCCACGGCCGCCGGGGCC
CTGGACCGGGGGCTGGTGAGCCCCGAGACGCAGATCACCGTGCCGCCGTACCTGCAGATC
GGTTCGGAGAAGATCACGGACGCGTTCGACCACGGGGCGCAGAACCGCACCGTGGCCGGG
ATCATCGCGGACTCGATGAACACGGGCACGGTGATCATGGGCTCGAAGATGGACAAGCAG
GCGCGTCACGACAACCTCGAGGGCTTCGGAGTGGGCTCGTCCACGGGCATCGAGCTGCCC
GGTGAGTCCACGGGGATCCTCACGCCCGCGGACCAGTGGGATGCGCGTCAGGAGTACACG
GTGCTGTTCGGCCAGGGCGTGTCCCAGACGCCGCTGCGCACGGCGTCGATCTTCCAGGCG
GTCGCGAACAAGGGGCGTCAGATCGAGCCGCGCATCGTGGAGAGCACCACGGCCGCGGAC
GGCACCGTGAGCACCCCGCAGGCGCCCGAGCCCCGACAGGTGATCTCCGAGTCCGCTGCG
CAGCAGACCCTGGACGTGATGGAGAACGTGGTCACGCAGGGCGGCGCCAAGGAGGCGGCG
GTGCCGGGCTACCGCGTGGGCGGCAAGACGGGCACCGCGGAGGCGCCGAGCGAGAAGGGC
GGCTACGACGGCTACACCACGTCCTTCGTGGGTGTCGCTCCCATGGAGGACCCGCAGTAC
CTCGTGGCCGTGACCATGCAGCGGCCCAAGGGCGACGTGCACACGGTGGGCGTGACCTCC
ACGTTCTCCACGATCATGTCCCAGGTGCTGCACCACTACAACGTGGCGCCCTCCACGACC
CAGGGCCCCAAGCTGCCCATGCAGGTCCCGGAGAACCTCAAGAAGGACGTGACGCCGACC
AACGCCCTGGACCAGACCTGGCCCCCGCCGGGCCGGGACGAGTCCCAGGGATAA


>KRH_14880 peptidoglycan synthase FtsI precursor
MPASPARRNRLLRPYTRMQVGIAVLLVLLLLVMGRLFWVQGLDPAGRADAAAAQRTLVEP
IPAVRGEITDTRGTVLARTLQRYDITVDQSAVTEVAVPQKDGSTQTVTPTQAVYKIADAL
GMKDTDVKKALDGDKTFNYVARGVTPEQYNALRELNLPYIYGQPTFQRSYPDGSLGGSVV
GFLGGDSEALGGIEQTQDASLRGTDGERRFEISGDGVRIPVAPQEQKAAQNGSDVKLSLD
SDVQFFAEQAVRERAKQLKAEWGTAVVLDVKTGKVLALADTSSVDPNVPGKAKAEDLSSR
AVTQAVEPGSTEKIATAAGALDRGLVSPETQITVPPYLQIGSEKITDAFDHGAQNRTVAG
IIADSMNTGTVIMGSKMDKQARHDNLEGFGVGSSTGIELPGESTGILTPADQWDARQEYT
VLFGQGVSQTPLRTASIFQAVANKGRQIEPRIVESTTAADGTVSTPQAPEPRQVISESAA
QQTLDVMENVVTQGGAKEAAVPGYRVGGKTGTAEAPSEKGGYDGYTTSFVGVAPMEDPQY
LVAVTMQRPKGDVHTVGVTSTFSTIMSQVLHHYNVAPSTTQGPKLPMQVPENLKKDVTPT
NALDQTWPPPGRDESQG

NBRC No.	clone name	start	stop	length(bp)
G09-002-042	MDFO1S8503E21	1,649,995	1,692,514	42,520
G09-002-043	MDFO1S8502I17	1,671,320	1,711,203	39,884

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.