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CDS Information : KRH_16640

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close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 1,884,746 / 1,885,558 / +
Location 1884746..1885558
Type CDS
Length 813 bp (270 aa)

close this sectionAnnotation

Product putative NarL family two-component response regulator
Gene name
Functional category Environmental Information and Cellular Processing
- Signal Transduction
EC number
Note KRH_16630 is a potential cognate sensor kinase.
Belongs to the NarL response regulator family, which includes the nitrate/nitrite response regulator protein NarL of Escherichia coli (P0AF28), the transcriptional regulatory protein FixJ of Rhizobium meliloti (P10958) and the competence protein ComA of Bacillus subtilis (P14204).
KEGG pathway
Sequence feature
References Family/Domain:IPR001789

close this sectionRelated links to external database

UniProtB2GKX5
INSDBAG30011.1 (DDBJ GenBank EMBL)
UniParcUPI000173449B

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=4e-62Q0RGL1_FRAAAPutative two-component system response regulatorAlignment
2E=3e-57A5CMZ0_CLAM3Putative two-component system response regulatorAlignment
3E=6e-53A0K2I9_ARTS2Two component transcriptional regulator, LuxR familyAlignment
4E=2e-52A1GDV6_9ACTOTwo component transcriptional regulator, LuxR familyAlignment
5E=8e-52Q9RJ54_STRCOPutative two-component response regulatorAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR000792 Bacterial regulatory protein, LuxR (Domain)
 [208-222]  1.4e-12 PR00038 [222-238]  1.4e-12 PR00038 [238-250]  1.4e-12 PR00038
PR00038   HTHLUXR
 [205-262]  3.4e-19 PF00196
PF00196   GerE
 [222-249]  PS00622
PS00622   HTH_LUXR_1
 [201-266]  26.552 PS50043
PS50043   HTH_LUXR_2
 [208-263]  4e-12 PD000307
PD000307   Q9RPE7_CORDI_Q9RPE7;
 [205-262]  9.5e-24 SM00421
SM00421   no description
IPR001789 Response regulator receiver (Domain)
 [5-119]  2e-21 PD000039
PD000039   Q9KYE7_STRCO_Q9KYE7;
 [3-116]  3.4e-32 SM00448
SM00448   no description
 [4-120]  31.297 PS50110
PS50110   RESPONSE_REGULATORY
 [3-117]  6.5e-39 PF00072
PF00072   Response_reg
IPR011006 CheY-like (Domain)
 [1-131]  1.5e-34 SSF52172
SSF52172   CheY-like
IPR011991 Winged helix repressor DNA-binding (Domain)
 [181-268]  5.7e-19 G3DSA:1.10.10.10
G3DSA:1.10.10.10   no description
IPR016032 Signal transduction response regulator, C-terminal effector (Domain)
 [204-270]  4.3e-18 SSF46894
SSF46894   C-terminal effector domain of the bipartite response regulators
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 270 amino acids
molecular mass 27,661.96 Da
pI 4.39
aa composition
AlaValLeuIlePheTrpProMetGlySer
17.4
(47aa)		8.1
(22aa)		10.7
(29aa)		2.6
(7aa)		1.9
(5aa)		0.4
(1aa)		6.3
(17aa)		1.5
(4aa)		8.9
(24aa)		6.7
(18aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.4
(20aa)		0.4
(1aa)		1.1
(3aa)		2.6
(7aa)		0
(0aa)		1.1
(3aa)		1.9
(5aa)		7
(19aa)		7.8
(21aa)		6.3
(17aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-001-083 MDFO1S8501C19 1,869,271 1,901,774 32,504

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.