CDS Information : KRH_16660

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Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	1,886,562 / 1,887,701 / +
Location	1886562..1887701
Type	CDS
Length	1,140 bp (379 aa)

Product	putative ABC transporter permease protein
Gene name
Functional category	Environmental Information and Cellular Processing - Membrane Transport
EC number
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR013525

UniProt	B2GKX7
INSD	BAG30013.1 (DDBJ GenBank EMBL)
UniParc	UPI000173449D

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=4e-87 A5CMY2_CLAM3 Putative Na+ efflux ABC transporter, permease component Alignment 2 E=6e-71 A4X5V7_9ACTO Putative uncharacterized protein precursor Alignment 3 E=6e-50 A6WFP7_KINRA Putative ABC transporter precursor Alignment 4 E=2e-41 Q0S6N8_RHOSR Possible ABC transporter, permease component Alignment 5 E=4e-41 Q3WJ44_9ACTO Similar to ABC-type Na+ efflux pump permease component Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR013525 ABC-2 type transporter (Domain) PF01061   ABC2_membrane
SignalP	No significant hit
TMHMM	Transmembrane 7
SOSUI	Transmembrane 7

size of protein	379 amino acids
molecular mass	39,930.02 Da
pI	5.4
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 15.6 (59aa) 10.3 (39aa) 12.1 (46aa) 5.5 (21aa) 4.2 (16aa) 1.6 (6aa) 6.6 (25aa) 4.2 (16aa) 7.1 (27aa) 6.3 (24aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.1 (23aa) 0 (0aa) 1.6 (6aa) 3.4 (13aa) 1.3 (5aa) 1.8 (7aa) 0.3 (1aa) 4.7 (18aa) 3.4 (13aa) 3.7 (14aa)

>KRH_16660 putative ABC transporter permease protein
ATGAGCACCGTCACCAGCACCCCTGAGCGCACCACGCAGCCGCGCAACCCGCGGCGCACC
CCCTTCTCGACCGCGGTGGGCACCGTGGCCGCACGCGAGATGAAGGTGAAGGCCACCTCC
AAGCCGTTCGTCATCACCACGCTGATCCTGCTGGCCGCCGCACTGGCCGCCACGCTGCTC
GTGCCCCGCCTGGGCGACCTCTTCGCCGGAGACGCCACCCGCGTGGCCGTGGTGGAGCAG
ACCGCTCCGTCCGTCCAGGCCCTCGGCGAGGACTACACGCCGCAGGCCGTCGGCTCCGCG
GAGGCGGCCCGGGAGGCCGTGCTCTCGGGTGCGGCCGACGCCGCCGTGGTGCCGGATCCC
GGCAGCCCGGCCGGTGTGAGCGTCCTGGCCATGACGGACGCCCCCTCGGATCTGGTGCAG
GCGCTGTCCACGAGCCCAGGTGTGGAGCTGCTGGACCCCACCGCACCGAACCCCGCCCTG
CGGTACCTCATGGCCTTCGGCTTCGGACTCGTGTTCTTCATGGCCGCCATCACGTTCGGC
CAGCAGATCGCGGTGTCCGTGATCGAGGAGAAGCAGTCTCGCGTCGTGGAGATCCTGCTC
GCCGCGGTCCCGGCGCGGGCCATGATGGCCGGGAAGGTGCTGGGCAACGCGGCCATGGCC
ATCCTGCAGGTGGCCCTGCTGGCCGGGGCGCTGCTGCTGGGCCTGCAGATCAACGGGGAC
GTGCTGCCCCTGGACGGGATGGGCGTGCCGATCCTGTGGTTCGTGGTGCTGTTCTCCATC
GGGTTCGTGATGATCGCCGCCCTCTACGCGGCGGCGGCGTCCATGGTGTCCCGGCAGGAG
GACATCGGCTCCACGTCCATGCCCGTGATGATGCTGATCATGCTCCCGTACTTCGGCGTG
ATCTTCTTCAACGACAATCCGGACGCGCTGCGCATCATGAGCTGGATCCCGTTCTCCGCC
CCGGTGGCCGTGCCGCTGCGCATCTTCCTGGGGCAGGGGCAGTGGTGGGAGCACGTCGGT
TCCCTCGTGCTGCTGATCGTGACCACCGCCCTGGCCATCTGGCTGGCCTCGGCCATCTAC
GAGCGCTCCATCCTGCGCACGGGCAAGGCGCTGAAGTGGCGGGAGGCCCTGCGGGGCTGA


>KRH_16660 putative ABC transporter permease protein
MSTVTSTPERTTQPRNPRRTPFSTAVGTVAAREMKVKATSKPFVITTLILLAAALAATLL
VPRLGDLFAGDATRVAVVEQTAPSVQALGEDYTPQAVGSAEAAREAVLSGAADAAVVPDP
GSPAGVSVLAMTDAPSDLVQALSTSPGVELLDPTAPNPALRYLMAFGFGLVFFMAAITFG
QQIAVSVIEEKQSRVVEILLAAVPARAMMAGKVLGNAAMAILQVALLAGALLLGLQINGD
VLPLDGMGVPILWFVVLFSIGFVMIAALYAAAASMVSRQEDIGSTSMPVMMLIMLPYFGV
IFFNDNPDALRIMSWIPFSAPVAVPLRIFLGQGQWWEHVGSLVLLIVTTALAIWLASAIY
ERSILRTGKALKWREALRG

NBRC No.	clone name	start	stop	length(bp)
G09-001-083	MDFO1S8501C19	1,869,271	1,901,774	32,504

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.