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CDS Information : KRH_18510

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close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 2,107,312 / 2,109,243 / +
Location 2107312..2109243
Type CDS
Length 1,932 bp (643 aa)

close this sectionAnnotation

Product putative ABC transporter permease/ATP-binding protein
Gene name
Functional category Environmental Information and Cellular Processing
- Membrane Transport
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR003439
Family/Domain:IPR001140

close this sectionRelated links to external database

UniProtB2GFR0
INSDBAG30198.1 (DDBJ GenBank EMBL)
UniParcUPI0001734333

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=0A0JT86_ARTS2ABC transporter, transmembrane regionAlignment
2E=0A1R3N9_ARTATPutative ABC transporter, ATP-binding proteinAlignment
3E=0Q6AH77_LEIXXABC transporter, NBP/MSD fusion protein
Pimaricin		Alignment
4E=0A0K143_ARTS2ABC transporter, transmembrane regionAlignment
5E=0A3THX7_9MICOPutative ABC transporterAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR001140 ABC transporter, transmembrane region (Domain)
 [32-344]  2.4e-64 PF00664
PF00664   ABC_membrane
IPR001482 Bacterial type II secretion system protein E (Domain)
 [415-463]  0.007 PD000739
PD000739   Q8ZUH9_PYRAE_Q8ZUH9;
IPR003439 ABC transporter related (Domain)
 [422-606]  9.2e-56 PF00005
PF00005   ABC_tran
 [533-547]  PS00211
PS00211   ABC_TRANSPORTER_1
 [532-575]  1e-12 PD000006
PD000006   Q9EW97_BBBBB_Q9EW97;
 [390-630]  22.963 PS50893
PS50893   ABC_TRANSPORTER_2
IPR003593 AAA+ ATPase, core (Domain)
 [421-607]  7.4e-17 SM00382
SM00382   no description
IPR011527 ABC transporter, transmembrane region, type 1 (Domain)
 [4-371]  1.1e-86 SSF90123
SSF90123   Multidrug resistance ABC transporter MsbA, N-terminal domain
 [34-356]  60.204 PS50929
PS50929   ABC_TM1F
IPR017871 ABC transporter, conserved site (Conserved_site)
 [533-547]  PS00211
PS00211   ABC_TRANSPORTER_1
SignalP No significant hit
TMHMM 
 [30-52]  Transmembrane (i-o) [113-135]  Transmembrane (o-i) [196-218]  Transmembrane (i-o)
Transmembrane 3   
SOSUI 
 [39-61]  Transmembrane [202-224]  Transmembrane
Transmembrane 2   

close this sectionCalculated information (Amino acid sequence)

size of protein 643 amino acids
molecular mass 70,283.58 Da
pI 5.53
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.7
(75aa)		10.1
(65aa)		10.9
(70aa)		4.5
(29aa)		3.7
(24aa)		0.9
(6aa)		3.4
(22aa)		3.3
(21aa)		7.5
(48aa)		5.9
(38aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.4
(41aa)		0
(0aa)		1.4
(9aa)		6.8
(44aa)		2.2
(14aa)		1.4
(9aa)		1.7
(11aa)		7.5
(48aa)		5.1
(33aa)		5.6
(36aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-001-093 MDFO1S8503L09 2,088,996 2,122,299 33,304

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.