CDS Information : KRH_18610

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	2,119,588 / 2,121,264 / +
Location	2119588..2121264
Type	CDS
Length	1,677 bp (558 aa)

Product	putative FAD-linked oxidase
Gene name
Functional category	Unclassified - putative function (general)
EC number
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR004113 Family/Domain:IPR006094 Uniprot:P97275 Pubmed:10692424

UniProt	B2GFS0
INSD	BAG30208.1 (DDBJ GenBank EMBL)
UniParc	UPI0001734366

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=0 A4AGI5_9ACTN Putative uncharacterized protein Alignment 2 E=1e-170 Q0RM07_FRAAA Putative uncharacterized protein Alignment 3 E=1e-167 Q2J9M2_FRASC FAD linked oxidase-like Alignment 4 E=1e-165 A6W6Q0_KINRA FAD linked oxidase domain protein Alignment 5 E=4e-94 Q0S6G5_RHOSR Possible alkylglycerone-phosphate synthase Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR004113 FAD linked oxidase, C-terminal (Domain) PF02913   FAD-oxidase_C IPR006094 FAD linked oxidase, N-terminal (Domain) PF01565   FAD_binding_4 IPR016164 FAD-linked oxidase-like, C-terminal (Domain) SSF55103   FAD-linked oxidases, C-terminal domain IPR016166 FAD-binding, type 2 (Domain) SSF56176   FAD-binding domain IPR016167 FAD-binding, type 2, subdomain 1 (Domain) G3DSA:3.30.43.10   no description IPR016168 FAD-linked oxidase, FAD-binding, subdomain 2 (Domain) G3DSA:3.30.465.20   no description IPR025650 Alkyldihydroxyacetonephosphate synthase (Family) PTHR11748:SF3   ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	558 amino acids
molecular mass	61,567.47 Da
pI	6.12
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 9.5 (53aa) 9.1 (51aa) 8.4 (47aa) 3.4 (19aa) 3.6 (20aa) 2.2 (12aa) 4.7 (26aa) 2.2 (12aa) 8.6 (48aa) 7.2 (40aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.7 (32aa) 0.7 (4aa) 1.4 (8aa) 3.8 (21aa) 2.5 (14aa) 3.4 (19aa) 3.4 (19aa) 7.2 (40aa) 6.3 (35aa) 6.8 (38aa)

>KRH_18610 putative FAD-linked oxidase
ATGGCAGACGTGAAGCACCAGAAGTGGTGGGGCTGGGGCGAGGAGGGCGTGTTCTTCGAC
TACCGGAACAAGCCCGCCTTCGCGCCCTTCGTGAAGGAGGCCATCGGGGTCTCCCTGCGG
CCCCGCGAGCGGGACACGGTGGACTTCTCCACCGCACGGGTCCCGGCCTCCCGGGCACCC
CAGGACGTCCTGGAGCAGCTGCGCGGGATCGTCGGCCGGGACCACCTGAGCACCGAGGAC
GAGACGCGCATCGTGCACTGGGCCGGGAAGTCCGTGCTGGAGCTGCTGCAGACGCTGCGC
AACGACTTCGCCCGCGTGCCGGACGTGGTGCTCTACCCGGGCAGCGAGGAGGAGGTCGGC
GAGCTCCTGCGGGCCGCCGTGGACCGGGACCTCGTGGTGATCCCCTTCGGCGGCGGTTCC
AGCATCTCCCGAAGCCTGCAGGCGGACCCGCACGAGAGCCGCTGCATCGTGTCCCTGGAC
CTGGGCCGGCTCAACCGGGTGCTCGAGATCGACGAGACCTCGGGCCTCGCCACCATCCAG
GCGGGTGTGCTGGGACCGGACATGGAGGAGCAGCTCAACGCCCGCGGGTGGACCATGGGC
CACTTCCCCGACTCGTTCGCGCACTCCACGCTGGGCGGCTGGGCCGCCACCCGCTCCTCC
GGCATGCAGTCGGACAAGTACGGGGACATCGCGGACATCGTGCGCGGGCTGCGCATGGTG
CGCCCGACAGGCACCGTGGTGCTGCGACCCCTGCCCTCCACCTCCACGGGCCCCGGGCTG
CGGGAGATGGTCATCGGCTCCGAGGGCCGCCTCGGTGTCATCACCGAGCTCACGGTGCAC
GTGCACCGGCTGCCGGAGCAGCACGAGGTCATCGCCTACATGTTCCCCACGTGGCAGCAG
GCGCTGACCGCGGTGCGCCGGTACACCGAGGCGGAGATCCCCCTGACCTTCGCGCGCGTC
TCGGACGCCCACGAGACCGCGTTCTCCCTGGCCACCCAGAAGGCGGCCACCTCCGTGAAG
GGCAGGCTCGCGGCCAGGGGGCAGGACGCGCTGTGGGCCGTGATGCGCCGGCGCGGCTGG
GACACGGACGCCATGTGCATCTCCTACGTGTGCTTCGAGGGCAGCGCGAAGGACGTCGCC
GACCGCAAGAAGGCTGTAGCGGCCATCGCCAAGTCCCAGGGCGCCCTCGTGCTCGGCTCC
GGGCCGGGCGCCCTCTACGACCAGAAGAAGTTCGACACCCCGCACCTGCGCGACTTCCTG
CTCGAGCAGAACACCGTGGGGGACGTCTCCGAGACCGCGGCGCCCTGGTCACGGCTCACC
ACGGTGCACAAGAACGCCTACGACGCCGTCCAGCGCGCCTACGAGCGCCTCGGCAAAACC
GGGTGGGTGATGTCCCACATGTCCCACTCGTACCACTCGGGGGCGTGCCTGTACTTCACG
TTCGCCTACGTCTTCGACGAGGAGGACCCCTACGAGGAGTACCGGGTGATCAAGTCCGCC
ATCCAGCAGTCCTTCGTGGACTCCGGGGCCACCCTGTCCCACCACCACGGCGTGGGCGTC
GAGCATCAGCCCTGGATGGAGCAGGACGTCTCCCCCGAGGGCGTCGCCCTGCTCAAGGGC
CTCTTCGAGGTCGCCGACCCCGGGGAGAACCTCAACCCGGGCAAGATCGTCTCCTGA


>KRH_18610 putative FAD-linked oxidase
MADVKHQKWWGWGEEGVFFDYRNKPAFAPFVKEAIGVSLRPRERDTVDFSTARVPASRAP
QDVLEQLRGIVGRDHLSTEDETRIVHWAGKSVLELLQTLRNDFARVPDVVLYPGSEEEVG
ELLRAAVDRDLVVIPFGGGSSISRSLQADPHESRCIVSLDLGRLNRVLEIDETSGLATIQ
AGVLGPDMEEQLNARGWTMGHFPDSFAHSTLGGWAATRSSGMQSDKYGDIADIVRGLRMV
RPTGTVVLRPLPSTSTGPGLREMVIGSEGRLGVITELTVHVHRLPEQHEVIAYMFPTWQQ
ALTAVRRYTEAEIPLTFARVSDAHETAFSLATQKAATSVKGRLAARGQDALWAVMRRRGW
DTDAMCISYVCFEGSAKDVADRKKAVAAIAKSQGALVLGSGPGALYDQKKFDTPHLRDFL
LEQNTVGDVSETAAPWSRLTTVHKNAYDAVQRAYERLGKTGWVMSHMSHSYHSGACLYFT
FAYVFDEEDPYEEYRVIKSAIQQSFVDSGATLSHHHGVGVEHQPWMEQDVSPEGVALLKG
LFEVADPGENLNPGKIVS

NBRC No.	clone name	start	stop	length(bp)
G09-001-093	MDFO1S8503L09	2,088,996	2,122,299	33,304
G09-001-094	MDFO1S8501C08	2,112,012	2,150,410	38,399

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.