CDS Information : KRH_20180

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Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	2,318,272 / 2,317,784 / -
Location	complement(2317784..2318272)
Type	CDS
Length	489 bp (162 aa)

Product	putative AsnC family transcriptional regulator
Gene name
Functional category	Genetic Information Processing - Transcription
EC number
Note	Belongs to the AsnC transcriptional regulator family, which includes the regulatory protein AsnC (P0ACI6) and leucine-responsive regulatory protein Lrp (P0ACJ0) of Escherichia coli and the transcriptional regulator AzlB of Bacillus subtilis (O07920).
KEGG pathway
Sequence feature
References	Family/Domain:asnC_CTD Family/Domain:asnC_DBD

UniProt	B2GGZ9
INSD	BAG30365.1 (DDBJ GenBank EMBL)
UniParc	UPI00017345DA

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=2e-38 A0JY21_ARTS2 Transcriptional regulator, AsnC family Alignment 2 E=1e-35 A1R7P5_ARTAT Transcriptional regulator, AsnC family Alignment 3 E=4e-34 A1SG73_NOCSJ Regulatory protein, AsnC/Lrp family Alignment 4 E=2e-32 Q0SF38_RHOSR Probable transcriptional regulator, AsnC family protein Alignment 5 E=4e-32 A4XCM0_9ACTO Regulatory protein, AsnC/Lrp family Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000485 HTH transcriptional regulator, AsnC-type (Domain) PS50956   HTH_ASNC_2 PR00033   HTHASNC IPR000485 Bacterial regulatory proteins, AsnC/Lrp (Family) PF01037   AsnC_trans_reg PS50956   HTH_ASNC_2 SM00344   no description PR00033   HTHASNC IPR011008 Dimeric alpha-beta barrel (Domain) SSF54909   Dimeric alpha+beta barrel IPR011991 Winged helix repressor DNA-binding (Domain) G3DSA:1.10.10.10   no description IPR019887 Transcription regulator AsnC-type, C-terminal (Domain) PF01037   AsnC_trans_reg G3DSA:3.30.70.920   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	162 amino acids
molecular mass	17,638.30 Da
pI	6.81
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 9.3 (15aa) 14.8 (24aa) 7.4 (12aa) 6.8 (11aa) 2.5 (4aa) 0 (0aa) 4.9 (8aa) 3.1 (5aa) 7.4 (12aa) 6.2 (10aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.3 (7aa) 0 (0aa) 2.5 (4aa) 4.9 (8aa) 1.2 (2aa) 1.2 (2aa) 1.9 (3aa) 9.9 (16aa) 6.2 (10aa) 5.6 (9aa)

>KRH_20180 putative AsnC family transcriptional regulator
ATGAAGATTGACGAGCTCGACGTGCGGATCGTGGAGCTGTTCACGCAGGACTCGCGCATC
GGGGTGCTCGCGGCGTCCCGGGCCCTGGGGGTTGCCCGGCCCACGGTGCAGTCCCGCCTG
GACAAGTTGCGCCGTGCCGGGGTGATCCAGGACATGGCGCCCACCCTGAACCCTGCGCGG
TTCGGCTATCCCGTGATGGCCATCGTCTCCATCGAGATCAGCCAGGGTGTGGGTCACGTG
CCCGTGGGTGAGGCCCTGCGGGAGATCCCGGAGGTCATCGAGATGTACACGGTCTCGGGG
GACCATGACGTGATGGTGCGCGTGGTGGCCCGCTCCAACGACGACCTGCAGCGGGTCATC
GACGCGATCGCCCGCACCGGGGCCGTGAACCGCACGCGCAGCGTGGTGGTGCTGCAGACC
CACTTCCAGAACCGTGTGCTGCCGCTGTTCGCGCAGGTGGGTGGTGCCGAGCCGTCGGAG
GGTTCCTGA


>KRH_20180 putative AsnC family transcriptional regulator
MKIDELDVRIVELFTQDSRIGVLAASRALGVARPTVQSRLDKLRRAGVIQDMAPTLNPAR
FGYPVMAIVSIEISQGVGHVPVGEALREIPEVIEMYTVSGDHDVMVRVVARSNDDLQRVI
DAIARTGAVNRTRSVVVLQTHFQNRVLPLFAQVGGAEPSEGS

NBRC No.	clone name	start	stop	length(bp)
G09-002-061	MDFO1S8503M02	2,299,580	2,340,118	40,539

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.