CDS Information : KRH_20650

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	2,372,592 / 2,374,034 / +
Location	2372592..2374034
Type	CDS
Length	1,443 bp (480 aa)

Product	penicillin-binding protein PbpA
Gene name	pbpA
Functional category	Environmental Information and Cellular Processing - Cellular Processes
EC number
Note	May be involved in cell division with the RodA protein (encoded by KRH_20640) (P0AD65; PMID:11418550).
KEGG pathway
Sequence feature
References	Family/Domain:IPR001460 Uniprot:Q9L656 Pubmed:11094280

UniProt	B2GHD6
INSD	BAG30412.1 (DDBJ GenBank EMBL)
UniParc	UPI00017346AB

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=1e-142 A1R0U9_ARTAT Penicillin binding protein transpeptidase domain Alignment 2 E=1e-137 A0JQV3_ARTS2 Peptidoglycan glycosyltransferase precursor Alignment 3 E=1e-120 A4AEX8_9ACTN Penicillin binding protein, transpeptidase domain Alignment 4 E=1e-120 A3TN15_9MICO PbpA Alignment 5 E=1e-119 A5CLU9_CLAM3 Penicillin-binding protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR001460 Penicillin-binding protein, transpeptidase (Domain) PF00905   Transpeptidase IPR012338 Beta-lactamase/transpeptidase-like (Domain) SSF56601   beta-lactamase/transpeptidase-like G3DSA:3.40.710.10   no description
SignalP	Bacteria, Gram-positive
TMHMM	Transmembrane 1
SOSUI	Transmembrane 1

size of protein	480 amino acids
molecular mass	51,490.78 Da
pI	4.41
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 10.6 (51aa) 8.3 (40aa) 9.6 (46aa) 3.3 (16aa) 3.3 (16aa) 0.6 (3aa) 4.6 (22aa) 2.7 (13aa) 7.1 (34aa) 7.9 (38aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 7.7 (37aa) 0.4 (2aa) 4.6 (22aa) 5.6 (27aa) 2.9 (14aa) 4.4 (21aa) 1 (5aa) 3.3 (16aa) 8.5 (41aa) 3.3 (16aa)

>KRH_20650 penicillin-binding protein PbpA
GTGAACAAGGCGATCCGCAGGATGTGGCTGATGGTCGCGGCCATCGTCATGGTGCTGCTG
CTGACCCTGACCTACGTGCAGTTCTTCGCGGCGAACGCCCTGCAGGCCAACCCGTGGAAC
AACCGCACGCTGTACGAGCAGTTCGGCCAGGACCGCGGCTCGATCCTGGTGGACGGCAAG
GAGATCGCCAAGTCCGTTCCCGCGGACGACGACTTCGAGCACCAGCGCGTGTACGCGGAC
TCCCCGCTGTACTCCAACCTCACGGGCTACTTCTCCCTGGTCTACGGCGCCACCGGACTC
GAGTCCACCCTGGGCGACGAGCTCTCGGGGGCCTCGGACGACCAGTTCTACGACCGCGTG
ATGTCCCTGTTCTCCGGGGACCAGCCCAAGGGCGCCTCCGTGGAGCTCACGCTGGACTCC
ACGCTGCAGAAGGTGGCCTACGACGCCCTGGAGGGCCACAACGGCTCGATCGTGGCCGTG
GACCCCAAGACCGGCGAGATCAAGGCCATGGTCTCCCGCAAGAGCTACGACGCCAACGCC
ATGTCCTCCCACAACACTGACAAGGTGGTGGCCGCCGCGGACCAGCTCAACGCGGACCCG
GACAAGCCGCTCGTGAACCGAGCGATCGGCGGGGACCTCTACTCCCCGGGCTCCACGTTC
AAGCTCATCGACACCGTGGCGGCCCTGGAGTCCGGCAAGTACACCACGGACTCCACCCTG
CAGAACCCCGGTGAGCTGCCCCTGCCGGACACCACCGTGACCCTGCCCAACTACCGGCAG
GGCGGCTGCTCCGCACGCACGCAGGTGAACCTGCAGTTCGCCCTGGAGCAGTCCTGCAAC
ACGCCGTTCGCGCAGCTGGCCATGGACCTCGGCCAGGACAAGATCCGTCAGACCGCGGAG
AACTTCGGCTACGGCCAGAAGCTGAGCATTCCGCTGGACGTGACCCCCTCCGTGTTCCCC
CAGGACATGAACCAGGCGCAGCTCGCACTGTCCTCCATCGGGCAGTACGACGTCCGCACC
ACTCCCCTGCAGGTGGCCATGACGTCCGCGGCGATCGCCAACGACGGCGTGATGATGAAG
CCCAGCCTGGTCAAGAACGTGCGCTCCTCGGACCTGTCCGTGATCGACCAGTTCAAGGCC
GAGCAGCTGCGCCGCTCCACGGACGCGGACACCGCCCACACCGTCACCGACCTCATGACC
TCCGTGGTGGACAACGGCATCGCCCACGGTGCCGCCGTCCCGGGTGTCAAGGTGGCCGGC
AAGACCGGCACGGCGGAGATCGGCAAGGACGGATTGAACGATTCGTGGTTCACTGGATTC
GCGCCCGCCGATGACCCCCAATTGGCGGTGGCCGTGGTGATCGAGGACGTGGACGTCACC
ACAGGGTCCACCCTGACCAGCCCCAGCGCACGGCAACTCTTCGAGGCGGTGTTGAACAAG
TGA


>KRH_20650 penicillin-binding protein PbpA
MNKAIRRMWLMVAAIVMVLLLTLTYVQFFAANALQANPWNNRTLYEQFGQDRGSILVDGK
EIAKSVPADDDFEHQRVYADSPLYSNLTGYFSLVYGATGLESTLGDELSGASDDQFYDRV
MSLFSGDQPKGASVELTLDSTLQKVAYDALEGHNGSIVAVDPKTGEIKAMVSRKSYDANA
MSSHNTDKVVAAADQLNADPDKPLVNRAIGGDLYSPGSTFKLIDTVAALESGKYTTDSTL
QNPGELPLPDTTVTLPNYRQGGCSARTQVNLQFALEQSCNTPFAQLAMDLGQDKIRQTAE
NFGYGQKLSIPLDVTPSVFPQDMNQAQLALSSIGQYDVRTTPLQVAMTSAAIANDGVMMK
PSLVKNVRSSDLSVIDQFKAEQLRRSTDADTAHTVTDLMTSVVDNGIAHGAAVPGVKVAG
KTGTAEIGKDGLNDSWFTGFAPADDPQLAVAVVIEDVDVTTGSTLTSPSARQLFEAVLNK

NBRC No.	clone name	start	stop	length(bp)
G09-001-105	MDFO1S8502C04	2,359,014	2,402,588	43,575

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.