CDS Information : KRH_20970

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	2,415,294 / 2,414,008 / -
Location	complement(2414008..2415294)
Type	CDS
Length	1,287 bp (428 aa)

Product	putative TetR family transcriptional regulator
Gene name
Functional category	Genetic Information Processing - Transcription
EC number
Note	Belongs to the TetR transcriptional regulator family, which includes the Tn10 tetracycline repressor protein TetR of Escherichia coli (P04483), the tetracenomycin C transcriptional repressor TcmR of Streptomyces glaucescens (P39885) and the cytochrome P450BM-3 repressor Bm3R1 of Bacillus megaterium (P43506).
KEGG pathway
Sequence feature
References	Family/Domain:tetR_DBD

UniProt	B2GHG8
INSD	BAG30444.1 (DDBJ GenBank EMBL)
UniParc	UPI0001734307

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=6e-28 Q5Z142_NOCFA Putative transcriptional regulator Alignment 2 E=1e-27 Q0S6F4_RHOSR Probable transcriptional regulator, TetR family protein Alignment 3 E=3e-24 Q2JCR5_FRASC Transcriptional regulator, TetR family Alignment 4 E=2e-21 Q47PD8_THEFY Putative TetR-family transcriptional regulator Alignment 5 E=1e-20 A0ADD2_STRAM Putative regulatory protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR001647 Bacterial regulatory protein, TetR (Domain) PS50977   HTH_TETR_2 PF00440   TetR_N PR00455   HTHTETR IPR009057 Homeodomain-like (Domain) SSF46689   Homeodomain-like IPR012287 Homeodomain-related (Domain) G3DSA:1.10.10.60   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	428 amino acids
molecular mass	43,580.92 Da
pI	4.78
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 17.8 (76aa) 7.5 (32aa) 7.2 (31aa) 1.2 (5aa) 2.3 (10aa) 0.9 (4aa) 8.9 (38aa) 0.9 (4aa) 10.5 (45aa) 9.6 (41aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.9 (21aa) 0.2 (1aa) 1.4 (6aa) 3 (13aa) 1.4 (6aa) 0.5 (2aa) 2.3 (10aa) 7.5 (32aa) 7 (30aa) 4.9 (21aa)

>KRH_20970 putative TetR family transcriptional regulator
ATGAGTGAGGCCAGCGCCGTCACCGAGGACGTGGTCACGCGCTCCATCCGCATGCTCGCG
GACCACGGGTACATGGAGACCACCGTGGAGCAGCTCGCCCAGGCCGCAGGCATCAGCCGG
GCCACGTTCTTCCGCAAGTACGGCAGCAAGGAGGACGTCGTCTTCGCGGACCACGCGGCC
ACCCTGGAGCGGCTGGAGGCCCTGCTGCAGCGCCCGGGACTGTCCCCGCAGGACGGCCTG
GTGGAGGGCGCGCAGCTCGTGTTCCGCCACAACCTGGACCACGCGCAGCGCGCGTTCGCC
CGGCACGACCTCCTGCAGCGCGTCGAGTCCCTGCGGGACCGTGAGATCGCCATGTCCTCG
CGCTACGAGCGGGTCTTCCATGCCTTCCTGCGTGCCGCCCTGCCCGACTCCCCGGACCGC
CGCGTCACGGCAGTGGCGCTGCCCGCGGCCACCGTGGCGGTGCACAACGCGTTCCTGCGC
ACGTGGCTGCGCGGTCCGAGGCCGGGGCAGGGGGAGCAGCTCGCGGCTGCGCTGAGCAGG
CGGGTCGTGTGGCTGTGTGCGCTGTTCGGCGTGATCCACCAGGAGACTGCCCCGTCCGGC
TCGCCGGTGGACCTCTCGTTCTCGTCCGCACAGGTCTCCCTCGAGCTCGACGACGCCGCG
GCGCCCCCGTACGCTCACGGCTCCCCGTCCCCGGCGGGTCGCCCGACCGCGAACGACGCC
GCGTCGTCGGGTGCCGGCGCACCCGGATCCTGGTCCCCTGCCGGGGCCACGGCCCCGGCA
GGAACCTCGTCCTCGTCGGACGCCTCGGCCGGTGACGCCGCAGCGCCCCCGGGGGCTGCC
CCGTCGGGCCCGTCGTCCTCGGGCGGGACCCCGTCCTCTCCTGACGTTTCCGCCGACGAC
GACGCGGCGACTCAGGAAGCTGCCCCATCGGGCCCGCAGCTGTTGAGGGGGACGCCGTCC
GCGCTGTACGCCCCGGCCGAGGACGATGCCGCGACCCCGGAGGCTGACCCGCCCGGGTCC
TCGGCCGGTGCGCCGGTCGGGGGCGGGGTGGACACCGCACGCGGGCGTGACGTCGGCGCG
GACCCGGACGGGTCTGCGGCGGGACCGGGGGAGCACGGCGAGCCTGCGCTCGCGAACCCG
CGCGGCGGCGTCGTGGGCGGGAACCGGACCGACACGGTGTGGGTGGGCGGCGATGCCCCG
ATCGTGGTGCTCGTGCCCCGTGGCGGGAACCCCGCGGACGTCGCCGAGCGCACGGCACGC
TCCGTCTACGAGGCGCTGCGCGGCTGA


>KRH_20970 putative TetR family transcriptional regulator
MSEASAVTEDVVTRSIRMLADHGYMETTVEQLAQAAGISRATFFRKYGSKEDVVFADHAA
TLERLEALLQRPGLSPQDGLVEGAQLVFRHNLDHAQRAFARHDLLQRVESLRDREIAMSS
RYERVFHAFLRAALPDSPDRRVTAVALPAATVAVHNAFLRTWLRGPRPGQGEQLAAALSR
RVVWLCALFGVIHQETAPSGSPVDLSFSSAQVSLELDDAAAPPYAHGSPSPAGRPTANDA
ASSGAGAPGSWSPAGATAPAGTSSSSDASAGDAAAPPGAAPSGPSSSGGTPSSPDVSADD
DAATQEAAPSGPQLLRGTPSALYAPAEDDAATPEADPPGSSAGAPVGGGVDTARGRDVGA
DPDGSAAGPGEHGEPALANPRGGVVGGNRTDTVWVGGDAPIVVLVPRGGNPADVAERTAR
SVYEALRG

NBRC No.	clone name	start	stop	length(bp)
G09-002-063	MDFO1S8503M22	2,380,401	2,424,895	44,495
G09-002-064	MDFO1S8503O10	2,396,648	2,441,283	44,636

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.