CDS Information : KRH_21560

Display	1000bp 10000bp 100000bp Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon	chromosome
Start / Stop / Direction	2,483,643 / 2,484,863 / +
Location	2483643..2484863
Type	CDS
Length	1,221 bp (406 aa)

Product	putative MFS transporter
Gene name
Functional category	Environmental Information and Cellular Processing - Membrane Transport
EC number
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR011701

UniProt	B2GHZ1
INSD	BAG30503.1 (DDBJ GenBank EMBL)
UniParc	UPI00017343A7

BLASTP Database:UniProtKB:12.5 show BLAST table	1 E=1e-102 A0QYI7_MYCS2 Integral membrane protein Alignment 2 E=7e-99 A1UGZ8_MYCSK Major facilitator superfamily MFS_1 Alignment 3 E=7e-99 Q1B809_MYCSS Major facilitator superfamily MFS_1 Alignment 4 E=7e-99 A3Q0K0_MYCSJ Major facilitator superfamily MFS_1 Alignment 5 E=8e-98 Q1DA69_MYXXD Major facilitator family transporter Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR007114 Major facilitator superfamily (Family) PS50850   MFS IPR011701 Major facilitator superfamily MFS-1 (Domain) PF07690   MFS_1 IPR011701 Major facilitator superfamily MFS_1 (Family) PF07690   MFS_1 IPR016196 Major facilitator superfamily, general substrate transporter (Domain) SSF103473   MFS general substrate transporter IPR020846 Major facilitator superfamily domain (Domain) PS50850   MFS
SignalP	No significant hit
TMHMM	Transmembrane 10
SOSUI	Transmembrane 12

size of protein	406 amino acids
molecular mass	41,485.12 Da
pI	10.24
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 18.5 (75aa) 12.6 (51aa) 14.3 (58aa) 3.4 (14aa) 4.7 (19aa) 1.5 (6aa) 5.7 (23aa) 2.5 (10aa) 10.1 (41aa) 4.7 (19aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.9 (20aa) 0.7 (3aa) 1.7 (7aa) 1.2 (5aa) 1 (4aa) 0.7 (3aa) 1.5 (6aa) 5.7 (23aa) 3.4 (14aa) 1.2 (5aa)

>KRH_21560 putative MFS transporter
GTGACCTCCACCGATCCCGCAGCCCTGGACCGGACGCGCATCCGCCGCGCCCGGCTCGCC
GCGTCCCTGTTCTTCCTGACCAACGGCGCGATCTTCTCCAACCTGCTGCCGCGGCTGCCC
GAGATCAAGGACATGTTCGAGCTCTCGAACGCCGCGTACGGACTCGCGTTGATCGCGTTC
CCGATCGGCGGGGTGGTGGCCGGTCCGCTGCCTGCCCCCGTGCTGCGGCGCTTCGGGACG
GCCCGCACCGCCGCAGTAGGCTCCGTGCTCCTGGCCGCGGCCGTGTTCGTGGCCGGGTCC
GTTCCCGTGCTCGCGGTGTTCGGCGCGGGGCTGTTCATCGCCGGGGTGCTGGACGCCGTG
GTGGACACCGCCCAGAACGCGCAGGGCCTGCGGGTCCAGCGTCTCGCGGGCACGTCCATG
ATCAACTCCATGCACGCACTGTGGAGCGTGGGTGCCGTGATCGGCGGGCTCATGGGCACC
ACGGCCGCGGCCCTGCACGTCCCCCTGGTGTGGCACTTCCTCACGAGCGCCGTCCTGTTC
TCCGCGGTGGCCGTGGTGGCGCTGCGCTGGGCGGTCCCGGACGACCACGAGGCCCACGCC
GCCGCCCAGGCCGAGAACGTCCCCGTGGACACCGCCGGCCTCCCCCGCCTGCCCAAAAGC
ACGGGCGCCGCCCTGCTCGCCCTGCTGCCCATCGCCGTGGTCGCGATGTCCGGGGTGCTC
GTGGAGGACGTGGGCTCCAACTGGTCCGCCGTGTACCTGCGGGACGCGCTCACCGCGCCG
GTGGCCATGGTGGGGCTGGGCTACGTGAGCCTCGTGGGCGCCCAGTTCGTGGGTCGCATC
CTGGGGGACAGGCTCATCGACGCGCTCGGTGCCGTGCGGGTCACCCGCATCGGCGGGGTG
CTGATCTTCGTGGGCCTGGGCGCCGTGGCGCTCGCCCCCGCCCCCTGGCTCGCCCTGGTG
GGATTCGCCCTGGCCGGGTTCGGCTGCGCCACCATGGTCCCCACCGCCTACGCCGCCGCG
GACCACGCGCCGGGCCTGAAGCCGGGCACGGGGCTCACGCTCGTGAGCTGGTGCATGCGC
ATCGTCTTCGTGGCCTCCCCGCCGCTCGTGGGCCTGCTCGCGGACGCCGTGGGACTGCGA
ACCGCGCTGCTCGTCTTCCCGCTCATGGGCGTGCTGGCGTTCTGCTTCGCCGGTGCCCTG
CGCGTGCGCGCCCGCTCCTGA


>KRH_21560 putative MFS transporter
MTSTDPAALDRTRIRRARLAASLFFLTNGAIFSNLLPRLPEIKDMFELSNAAYGLALIAF
PIGGVVAGPLPAPVLRRFGTARTAAVGSVLLAAAVFVAGSVPVLAVFGAGLFIAGVLDAV
VDTAQNAQGLRVQRLAGTSMINSMHALWSVGAVIGGLMGTTAAALHVPLVWHFLTSAVLF
SAVAVVALRWAVPDDHEAHAAAQAENVPVDTAGLPRLPKSTGAALLALLPIAVVAMSGVL
VEDVGSNWSAVYLRDALTAPVAMVGLGYVSLVGAQFVGRILGDRLIDALGAVRVTRIGGV
LIFVGLGAVALAPAPWLALVGFALAGFGCATMVPTAYAAADHAPGLKPGTGLTLVSWCMR
IVFVASPPLVGLLADAVGLRTALLVFPLMGVLAFCFAGALRVRARS

NBRC No.	clone name	start	stop	length(bp)
G09-002-067	MDFO1S8503E11	2,467,549	2,509,938	42,390

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.