small fontnormal fontlarge fontmail to

CDS Information : KRH_22860

close allopen/close all

close this sectionGenomic map

Display Clone

Kocuria rhizophila DC2201 (= NBRC 103217) chromosome

 Legend Jump
Overview 
Genome
Clone

close this sectionLocation

Organism Kocuria rhizophila DC2201 (= NBRC 103217)
Replicon chromosome
Start / Stop / Direction 2,616,719 / 2,615,394 / -
Location complement(2615394..2616719)
Type CDS
Length 1,326 bp (441 aa)

close this sectionAnnotation

Product deoxyribodipyrimidine photo-lyase
Synonym: DNA photolyase
Synonym: photoreactivating enzyme
Gene name phr
Synonym: phrB
Functional category Genetic Information Processing
- Replication and Repair
EC number 4.1.99.3
Note
KEGG pathway KO:K01669
Sequence feature
References Uniprot:P00914 Pubmed:2200511

close this sectionRelated links to external database

UniProtB2GIV6
INSDBAG30633.1 (DDBJ GenBank EMBL)
UniParcUPI0001734596

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=1e-143A0JYK6_ARTS2Deoxyribodipyrimidine photo-lyase type IAlignment
2E=1e-143Q6AFL3_LEIXXDNA photolyaseAlignment
3E=1e-140A5CNC2_CLAM3Deoxyribodipyrimidine photo-lyaseAlignment
4E=1e-136A1R243_ARTATPutative deoxyribodipyrimidine photolyaseAlignment
5E=1e-131A4AIU5_9ACTNDNA photolyaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR002081 Deoxyribodipyrimidine photolyase, class 1 (Domain)
 [139-155]  3.6e-22 PR00147 [317-333]  3.6e-22 PR00147 [337-355]  3.6e-22 PR00147 [376-390]  3.6e-22 PR00147
PR00147   DNAPHOTLYASE
IPR002081 Deoxyribodipyrimidine photolyase, class 1 (Family)
 [139-155]  3.6e-22 PR00147 [317-333]  3.6e-22 PR00147 [337-355]  3.6e-22 PR00147 [376-390]  3.6e-22 PR00147
PR00147   DNAPHOTLYASE
IPR002081 Cryptochrome/DNA photolyase, class 1 (Region)
 [139-155]  3.6e-22 PR00147 [317-333]  3.6e-22 PR00147 [337-355]  3.6e-22 PR00147 [376-390]  3.6e-22 PR00147
PR00147   DNAPHOTLYASE
IPR005101 DNA photolyase, FAD-binding (Domain)
 [187-441]  4.2e-87 SSF48173
SSF48173   Cryptochrome/photolyase FAD-binding domain
 [203-441]  5.1e-74 PF03441
PF03441   FAD_binding_7
IPR006050 DNA photolyase, N-terminal (Domain)
 [1-206]  3.7e-63 SSF52425
SSF52425   Cryptochrome/photolyase, N-terminal domain
 [1-171]  7e-40 PF00875
PF00875   DNA_photolyase
IPR006051 DNA photolyase, FAD- binding N-terminal (Domain)
 [205-414]  6e-79 PD004390
PD004390   Q6AFL3_BBBBB_Q6AFL3;
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold (Domain)
 [2-127]  3.6e-35 G3DSA:3.40.50.620
G3DSA:3.40.50.620   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 441 amino acids
molecular mass 49,889.92 Da
pI 4.85
aa composition
AlaValLeuIlePheTrpProMetGlySer
9.1
(40aa)		7.7
(34aa)		9.8
(43aa)		1.6
(7aa)		3.4
(15aa)		5
(22aa)		8.4
(37aa)		1.6
(7aa)		7.3
(32aa)		5
(22aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.4
(24aa)		0.7
(3aa)		2.9
(13aa)		2
(9aa)		2.5
(11aa)		2.3
(10aa)		3.6
(16aa)		7
(31aa)		7
(31aa)		7.7
(34aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G09-002-072 MDFO1S8502O08 2,599,638 2,638,430 38,793

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.