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CDS Information : KSE_05320

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close this sectionGenomic map

Display Clone

Kitasatospora setae NBRC 14216T chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kitasatospora setae NBRC 14216T
Replicon chromosome
Start / Stop / Direction 606,982 / 606,461 / -
Location complement(606461..606982)
Type CDS
Length 522 bp (173 aa)

close this sectionAnnotation

Product hypothetical protein
Gene name
Functional category similar to unknown proteins
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=2e-47C9ZET8_STRSWPutative uncharacterized proteinAlignment
2E=1e-44B5I0F0_9ACTOPutative uncharacterized proteinAlignment
3E=2e-42Q9ZC15_STRCOPutative uncharacterized protein SCO6498Alignment
4E=2e-35D1Z0H5_METPSPutative uncharacterized proteinAlignment
5E=2e-27Q3J300_RHOS4ATP-dependent DNA ligaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR002755 DNA primase, small subunit (Family)
 [15-118]  7.6e-06 PF01896
PF01896   DNA_primase_S
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 173 amino acids
molecular mass 19,141.88 Da
pI 11.24
aa composition
AlaValLeuIlePheTrpProMetGlySer
18.5
(32aa)
5.2
(9aa)
13.9
(24aa)
1.2
(2aa)
1.7
(3aa)
1.7
(3aa)
8.1
(14aa)
1.2
(2aa)
5.8
(10aa)
1.2
(2aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.8
(10aa)
0
(0aa)
1.2
(2aa)
1.7
(3aa)
1.7
(3aa)
0.6
(1aa)
1.2
(2aa)
16.2
(28aa)
8.7
(15aa)
4.6
(8aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G20-001-021 KS1E11L00038D02 592,961 632,281 39,321

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.