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CDS Information : KSE_25120

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close this sectionGenomic map

Display Clone

Kitasatospora setae NBRC 14216T chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kitasatospora setae NBRC 14216T
Replicon chromosome
Start / Stop / Direction 2,792,849 / 2,794,261 / +
Location 2792849..2794261
Type CDS
Length 1,413 bp (470 aa)

close this sectionAnnotation

Product putative glutamate decarboxylase
Gene name
Functional category
- metabolism of amino acids and related molecules
EC number 4.1.1.15
Note
KEGG pathway map:00251 KO:K01580
map:00252 KO:K01580
map:00410 KO:K01580
map:00430 KO:K01580
map:00650 KO:K01580
Sequence feature
References Uniprot:Q9EYW9 Pubmed:11309128

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0B5HYC6_9ACTOGlutamate decarboxylaseAlignment
2E=0B5GPC6_STRCLGlutamate decarboxylaseAlignment
3E=0C9Z0V4_STRSWPutative glutamate decarboxylaseAlignment
4E=0D1XTJ5_9ACTOGlutamate decarboxylaseAlignment
5E=0B1VSF2_STRGGPutative glutamate decarboxylaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR002129 Pyridoxal-dependent decarboxylase (Family)
 [48-384]  1.7e-68 PF00282
PF00282   Pyridoxal_deC
IPR010107 Glutamate decarboxylase (Family)
 [30-451]  3.4e-268 TIGR01788
TIGR01788   Glu-decarb-GAD: glutamate decarboxylas
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (Domain)
 [72-349]  1.6e-27 G3DSA:3.40.640.10
G3DSA:3.40.640.10   no description
IPR015424 Pyridoxal phosphate-dependent transferase, major region (Domain)
 [4-454]  1.1e-122 SSF53383
SSF53383   PLP-dependent transferases
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 470 amino acids
molecular mass 52,115.66 Da
pI 5.35
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.1
(52aa)
7.7
(36aa)
11.1
(52aa)
2.6
(12aa)
4.5
(21aa)
1.7
(8aa)
7
(33aa)
2.8
(13aa)
8.1
(38aa)
3.4
(16aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.6
(17aa)
2.6
(12aa)
2.6
(12aa)
3
(14aa)
2.6
(12aa)
2.1
(10aa)
2.6
(12aa)
8.1
(38aa)
6.2
(29aa)
7
(33aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G20-001-110 KS1E11L00040A02 2,758,912 2,794,833 35,922
G20-001-111 KS1E11L00032D06 2,784,315 2,821,870 37,556

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.