CDS Information : KSE_25120

Display	1000bp 10000bp 100000bp Clone

Kitasatospora setae NBRC 14216T chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kitasatospora setae NBRC 14216T
Replicon	chromosome
Start / Stop / Direction	2,792,849 / 2,794,261 / +
Location	2792849..2794261
Type	CDS
Length	1,413 bp (470 aa)

Product	putative glutamate decarboxylase
Gene name
Functional category	- metabolism of amino acids and related molecules
EC number	4.1.1.15
Note
KEGG pathway	map:00251 KO:K01580 map:00252 KO:K01580 map:00410 KO:K01580 map:00430 KO:K01580 map:00650 KO:K01580
Sequence feature
References	Uniprot:Q9EYW9 Pubmed:11309128

BLASTP Database:UniProtKB:2010_04 show BLAST table	1 E=0 B5HYC6_9ACTO Glutamate decarboxylase Alignment 2 E=0 B5GPC6_STRCL Glutamate decarboxylase Alignment 3 E=0 C9Z0V4_STRSW Putative glutamate decarboxylase Alignment 4 E=0 D1XTJ5_9ACTO Glutamate decarboxylase Alignment 5 E=0 B1VSF2_STRGG Putative glutamate decarboxylase Alignment
HAMAP	No significant hit
InterPro Database:interpro:26.0	IPR002129 Pyridoxal-dependent decarboxylase (Family) PF00282   Pyridoxal_deC IPR010107 Glutamate decarboxylase (Family) TIGR01788   Glu-decarb-GAD: glutamate decarboxylas IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (Domain) G3DSA:3.40.640.10   no description IPR015424 Pyridoxal phosphate-dependent transferase, major region (Domain) SSF53383   PLP-dependent transferases
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	470 amino acids
molecular mass	52,115.66 Da
pI	5.35
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 11.1 (52aa) 7.7 (36aa) 11.1 (52aa) 2.6 (12aa) 4.5 (21aa) 1.7 (8aa) 7 (33aa) 2.8 (13aa) 8.1 (38aa) 3.4 (16aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.6 (17aa) 2.6 (12aa) 2.6 (12aa) 3 (14aa) 2.6 (12aa) 2.1 (10aa) 2.6 (12aa) 8.1 (38aa) 6.2 (29aa) 7 (33aa)

>KSE_25120 putative glutamate decarboxylase
ATGGCGTTGCACAAGGGGCAGGGCAGGGGCGAGGACGAGCGCCGGCTGCCGGTCAGCCCG
CTGCACGTGCTGACCGATCCGCTGGGCTCGATGCAGCTGGCCCCGCCGCTGCACCGGCTG
CCCCGGGTGCCGATCCCGCCGCCGGTCGCGTACCAGCTGATCCACGACGAGCTGATGCTG
GACGGCAACGCCCGGCTCAACCTGGCGACCTTCGTCACCACCCAGATGGACGAGCACGCG
GACCGGCTGATGGCCGAGTGCCGCGACAAGAACATGATCGACAAGGACGAGTACCCGCAG
ACCGCCGAGCTGGAGCGACGCTGCGTGGCGATCCTCGCCGACCTCTGGCACGCGCCCGAC
CCGGCGGCCGCGGTGGGCTGCTCGACCACCGGCTCCAGCGAGGCGTGCATGCTCGCCGGG
ATGGCGCTGAAACGGCGCTGGACGGCCCGCAACGCCGACCGGTACGCGGCCGGGGCGCGG
CCGAACCTGGTGATGGGCGTCAACGTGCAGGTCTGCTGGGAGAAGTTCTGCAACTTCTGG
GAGGTCGAGGCGCGGCTCGTCCCGATGGAGGGCGAGCGCTTCCACCTGAGCGCCGAGGAG
GCCGTCGCGCGCTGCGACGAGAACACCATCGGCGTGGTCGGCATCCTGGGCTCCACCTTC
GACGGCTCGTACGAGCCGATCGCCGAGATCTGCGCCGCCCTGGACGCCTTCCAGGAACGC
ACCGGCCTGGACGTGCCGGTGCACGTGGACGGGGCGTCCGGCGGCATGGTGGCGCCGTTC
CTCGACCCCGAGCTGAAGTGGGACTTCCGGCTGCCCCGGGTCGCCTCGATCAACGCCAGC
GGCCACAAGTACGGCCTGGTGTACCCCGGCGTCGGCTGGGCGCTGTGGCGGGACGGCGAG
GCGCTGCCCGAGGAGCTGGTCTTCAAGGTCAACTACCTGGGCGGCGAGATGCCGACCTTC
GCGCTGAACTTCTCCCGGCCCGGAGCGGAGGTCGTCGCCCAGTACTACGCGTTCCTGCGG
CTCGGCTTCGGCGGCTACCACGCGATCCAGCAGGCCTGCCGGGACGTCGCCGAGTACCTG
GCGGCGGAGATCGCGAAGTGCGGACCGTTCCGGCTGATCACCAAGGGCGACCAGCTGCCG
GTGTTCGCGTTCACCACCGTGGACGGCTGCCCGTTCGACGTCTTCGACGTGTCGCGGCGG
CTGCGCGAACGCGGCTGGCAGGTGCCCGCGTACACCTTCCCGGAGGGGCGGACCGACCTG
GCGGTACTGCGGGTGGTCTGCCGCAACGGGTTCTCCCGGGACCTCGCCGACCTGCTGCTG
GCCGACCTGCGGCGGCTGCTCCCCGAGCTGGAGCGCCAGCCCGCGCCGCTCAGCGAGCTG
GGGATGCCGCAGCGCAGCGGGTTCCACCACTGA


>KSE_25120 putative glutamate decarboxylase
MALHKGQGRGEDERRLPVSPLHVLTDPLGSMQLAPPLHRLPRVPIPPPVAYQLIHDELML
DGNARLNLATFVTTQMDEHADRLMAECRDKNMIDKDEYPQTAELERRCVAILADLWHAPD
PAAAVGCSTTGSSEACMLAGMALKRRWTARNADRYAAGARPNLVMGVNVQVCWEKFCNFW
EVEARLVPMEGERFHLSAEEAVARCDENTIGVVGILGSTFDGSYEPIAEICAALDAFQER
TGLDVPVHVDGASGGMVAPFLDPELKWDFRLPRVASINASGHKYGLVYPGVGWALWRDGE
ALPEELVFKVNYLGGEMPTFALNFSRPGAEVVAQYYAFLRLGFGGYHAIQQACRDVAEYL
AAEIAKCGPFRLITKGDQLPVFAFTTVDGCPFDVFDVSRRLRERGWQVPAYTFPEGRTDL
AVLRVVCRNGFSRDLADLLLADLRRLLPELERQPAPLSELGMPQRSGFHH

NBRC No.	clone name	start	stop	length(bp)
G20-001-110	KS1E11L00040A02	2,758,912	2,794,833	35,922
G20-001-111	KS1E11L00032D06	2,784,315	2,821,870	37,556

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.