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CDS Information : KSE_26470

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close this sectionGenomic map

Display Clone

Kitasatospora setae NBRC 14216T chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kitasatospora setae NBRC 14216T
Replicon chromosome
Start / Stop / Direction 2,953,434 / 2,953,988 / +
Location 2953434..2953988
Type CDS
Length 555 bp (184 aa)

close this sectionAnnotation

Product hypothetical protein
Gene name
Functional category similar to unknown proteins
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-20B5G8H1_9ACTOSuperoxide dismutase [Cu-Zn]Alignment
2E=2e-20Q0RZ43_RHOSRSuperoxide dismutase [Cu-Zn]Alignment
3E=4e-19C1BAR1_RHOOBSuperoxide dismutase [Cu-Zn]Alignment
4E=2e-18C1YPT7_NOCDASuperoxide dismutase [Cu-Zn]Alignment
5E=2e-16D1X5K1_9ACTOSuperoxide dismutase [Cu-Zn]Alignment
HAMAP No significant hit
InterPro No significant hit
SignalP
 [1-24]  0.545 Signal
Bacteria, Gram-positive   
TMHMM No significant hit
SOSUI
 [1-23]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 184 amino acids
molecular mass 18,319.48 Da
pI 6
aa composition
AlaValLeuIlePheTrpProMetGlySer
16.3
(30aa)
11.4
(21aa)
6.5
(12aa)
1.1
(2aa)
2.2
(4aa)
0.5
(1aa)
12.5
(23aa)
1.1
(2aa)
13
(24aa)
6
(11aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.3
(8aa)
1.1
(2aa)
1.1
(2aa)
2.2
(4aa)
1.1
(2aa)
0
(0aa)
4.9
(9aa)
5.4
(10aa)
6.5
(12aa)
2.7
(5aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G20-001-117 KS1E11L00014E07 2,928,185 2,963,924 35,740
G20-001-118 KS1E11L00005B03 2,950,867 2,988,465 37,599

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.